{-| Module : Gargantext.Viz.Phylo.Tools Description : Phylomemy Tools to build/manage it Copyright : (c) CNRS, 2017-Present License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX -} {-# LANGUAGE NoImplicitPrelude #-} {-# LANGUAGE FlexibleContexts #-} {-# LANGUAGE OverloadedStrings #-} module Gargantext.Viz.Phylo.Metrics.Clustering where import Data.List (last,head,union,concat,null,nub,(++),init,tail,elemIndex,groupBy,(!!)) import Data.Map (Map,elems,adjust,unionWith,intersectionWith,fromList,mapKeys) import Data.Set (Set) import Data.Tuple (fst, snd) import Data.Graph.Clustering.Louvain.CplusPlus import Gargantext.Prelude hiding (head) import Gargantext.Viz.Phylo import Gargantext.Viz.Phylo.Tools import qualified Data.List as List import qualified Data.Map as Map import qualified Data.Set as Set -- | To apply the related components method to a PhyloGraph -- curr = the current PhyloGroup -- (nodes,edges) = the initial PhyloGraph minus the current PhyloGroup -- next = the next PhyloGroups to be added in the cluster -- memo = the memory of the allready created clusters relatedComp :: Int -> PhyloGroup -> PhyloGraph -> [PhyloGroup] -> [[PhyloGroup]] -> [[PhyloGroup]] relatedComp idx curr (nodes,edges) next memo | null nodes' && null next' = memo' | (not . null) next' = relatedComp idx (head next') (nodes',edges) (tail next') memo' | otherwise = relatedComp (idx + 1) (head nodes') (tail nodes',edges) [] memo' where -------------------------------------- memo' :: [[PhyloGroup]] memo' | null memo = [[curr]] | idx == ((length memo) - 1) = (init memo) ++ [(last memo) ++ [curr]] | otherwise = memo ++ [[curr]] -------------------------------------- next' :: [PhyloGroup] next' = filter (\x -> not $ elem x $ concat memo) $ nub $ next ++ (getNeighbours False curr edges) -------------------------------------- nodes' :: [PhyloGroup] nodes' = filter (\x -> not $ elem x next') nodes -------------------------------------- louvain :: (PhyloNodes,PhyloEdges) -> [Cluster] louvain (nodes,edges) = undefined -- louvain :: (PhyloNodes,PhyloEdges) -> [Cluster] -- louvain (nodes,edges) = map (\community -> map (\node -> nodes !! (l_node_id node)) community) -- $ groupBy (l_community_id) -- $ cLouvain -- $ mapKeys (\(x,y) -> (idx x, idx y)) -- $ fromList edges -- where -- -------------------------------------- -- idx :: PhyloGroup -> Int -- idx e = case elemIndex e nodes of -- Nothing -> panic "[ERR][Gargantext.Viz.Phylo.Metrics.Clustering] a node is missing" -- Just i -> i -- --------------------------------------