{-| import Gargantext.Database.Prelude (Cmd, runPGSQuery) Module : Gargantext.Database.Query.Table.Node Description : Main Tools of Node to the database Copyright : (c) CNRS, 2017-Present License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX -} {-# OPTIONS_GHC -fno-warn-orphans #-} {-# LANGUAGE Arrows #-} {-# LANGUAGE ConstraintKinds #-} {-# LANGUAGE FunctionalDependencies #-} {-# LANGUAGE QuasiQuotes #-} {-# LANGUAGE TemplateHaskell #-} {-# LANGUAGE TypeFamilies #-} module Gargantext.Database.Query.Table.Node where import Control.Arrow (returnA) import Control.Lens (set, view) import Data.Aeson import Data.Maybe (fromMaybe) import Data.Text (Text) import Database.PostgreSQL.Simple.SqlQQ (sql) import Opaleye hiding (FromField) import Prelude hiding (null, id, map, sum) import qualified PUBMED.Types as PUBMED import Gargantext.Core import Gargantext.Core.Types import Gargantext.Core.Types.Query (Limit, Offset) import Gargantext.Database.Admin.Types.Hyperdata import Gargantext.Database.Admin.Types.Hyperdata.Default import Gargantext.Database.Prelude import Gargantext.Database.Query.Filter (limit', offset') import Gargantext.Database.Query.Table.Node.Error import Gargantext.Database.Schema.Node import Gargantext.Prelude hiding (sum, head) import qualified Database.PostgreSQL.Simple as PGS queryNodeSearchTable :: Select NodeSearchRead queryNodeSearchTable = selectTable nodeTableSearch selectNode :: Column SqlInt4 -> Select NodeRead selectNode id' = proc () -> do row <- queryNodeTable -< () restrict -< _node_id row .== id' returnA -< row runGetNodes :: Select NodeRead -> Cmd err [Node HyperdataAny] runGetNodes = runOpaQuery ------------------------------------------------------------------------ ------------------------------------------------------------------------ -- | order by publication date -- Favorites (Bool), node_ngrams selectNodesWith :: HasDBid NodeType => ParentId -> Maybe NodeType -> Maybe Offset -> Maybe Limit -> Select NodeRead selectNodesWith parentId maybeNodeType maybeOffset maybeLimit = --offset' maybeOffset $ limit' maybeLimit $ orderBy (asc (hyperdataDocument_Publication_date . node_hyperdata)) $ selectNodesWith' parentId typeId limit' maybeLimit $ offset' maybeOffset $ orderBy (asc _node_id) $ selectNodesWith' parentId maybeNodeType selectNodesWith' :: HasDBid NodeType => ParentId -> Maybe NodeType -> Select NodeRead selectNodesWith' parentId maybeNodeType = proc () -> do node' <- (proc () -> do row@(Node _ _ typeId _ parentId' _ _ _) <- queryNodeTable -< () restrict -< parentId' .== (pgNodeId parentId) let typeId' = maybe 0 toDBid maybeNodeType restrict -< if typeId' > 0 then typeId .== (sqlInt4 (typeId' :: Int)) else (sqlBool True) returnA -< row ) -< () returnA -< node' deleteNode :: NodeId -> Cmd err Int deleteNode n = mkCmd $ \conn -> fromIntegral <$> runDelete_ conn (Delete nodeTable (\(Node n_id _ _ _ _ _ _ _) -> n_id .== pgNodeId n) rCount ) deleteNodes :: [NodeId] -> Cmd err Int deleteNodes ns = mkCmd $ \conn -> fromIntegral <$> runDelete_ conn (Delete nodeTable (\(Node n_id _ _ _ _ _ _ _) -> in_ ((map pgNodeId ns)) n_id) rCount ) -- TODO: NodeType should match with `a' getNodesWith :: (JSONB a, HasDBid NodeType) => NodeId -> proxy a -> Maybe NodeType -> Maybe Offset -> Maybe Limit -> Cmd err [Node a] getNodesWith parentId _ nodeType maybeOffset maybeLimit = runOpaQuery $ selectNodesWith parentId nodeType maybeOffset maybeLimit -- TODO: Why is the second parameter ignored? -- TODO: Why not use getNodesWith? getNodesWithParentId :: (Hyperdata a, JSONB a) => Maybe NodeId -> Cmd err [Node a] getNodesWithParentId n = runOpaQuery $ selectNodesWithParentID n' where n' = case n of Just n'' -> n'' Nothing -> 0 -- | Given a node id, find it's closest parent of given type -- NOTE: This isn't too optimal: can make successive queries depending on how -- deeply nested the child is. getClosestParentIdByType :: HasDBid NodeType => NodeId -> NodeType -> Cmd err (Maybe NodeId) getClosestParentIdByType nId nType = do result <- runPGSQuery query (PGS.Only nId) case result of [(NodeId parentId, pTypename)] -> do if toDBid nType == pTypename then pure $ Just $ NodeId parentId else getClosestParentIdByType (NodeId parentId) nType _ -> pure Nothing where query :: PGS.Query query = [sql| SELECT n2.id, n2.typename FROM nodes n1 JOIN nodes n2 ON n1.parent_id = n2.id WHERE n1.id = ?; |] -- | Similar to `getClosestParentIdByType` but includes current node -- in search too getClosestParentIdByType' :: HasDBid NodeType => NodeId -> NodeType -> Cmd err (Maybe NodeId) getClosestParentIdByType' nId nType = do result <- runPGSQuery query (PGS.Only nId) case result of [(NodeId id, pTypename)] -> do if toDBid nType == pTypename then pure $ Just $ NodeId id else getClosestParentIdByType nId nType _ -> pure Nothing where query :: PGS.Query query = [sql| SELECT n.id, n.typename FROM nodes n WHERE n.id = ?; |] -- | Given a node id, find all it's children (no matter how deep) of -- given node type. getChildrenByType :: HasDBid NodeType => NodeId -> NodeType -> Cmd err [NodeId] getChildrenByType nId nType = do result <- runPGSQuery query (PGS.Only nId) children_lst <- mapM (\(id, _) -> getChildrenByType id nType) result pure $ concat $ [fst <$> filter (\(_, pTypename) -> pTypename == toDBid nType) result] ++ children_lst where query :: PGS.Query query = [sql| SELECT n.id, n.typename FROM nodes n WHERE n.parent_id = ?; |] ------------------------------------------------------------------------ getDocumentsV3WithParentId :: HasDBid NodeType => NodeId -> Cmd err [Node HyperdataDocumentV3] getDocumentsV3WithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeDocument) -- TODO: merge with getDocumentsWithParentId by having a class IsHyperdataDocument getDocumentsWithParentId :: HasDBid NodeType => NodeId -> Cmd err [Node HyperdataDocument] getDocumentsWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeDocument) getListsModelWithParentId :: HasDBid NodeType => NodeId -> Cmd err [Node HyperdataModel] getListsModelWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeModel) getCorporaWithParentId :: HasDBid NodeType => NodeId -> Cmd err [Node HyperdataCorpus] getCorporaWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeCorpus) ------------------------------------------------------------------------ selectNodesWithParentID :: NodeId -> Select NodeRead selectNodesWithParentID n = proc () -> do row@(Node _ _ _ _ parent_id _ _ _) <- queryNodeTable -< () restrict -< parent_id .== (pgNodeId n) returnA -< row ------------------------------------------------------------------------ -- | Example of use: -- runCmdReplEasy (getNodesWithType NodeList (Proxy :: Proxy HyperdataList)) getNodesWithType :: (HasNodeError err, JSONB a, HasDBid NodeType) => NodeType -> proxy a -> Cmd err [Node a] getNodesWithType nt _ = runOpaQuery $ selectNodesWithType nt where selectNodesWithType :: HasDBid NodeType => NodeType -> Select NodeRead selectNodesWithType nt' = proc () -> do row@(Node _ _ tn _ _ _ _ _) <- queryNodeTable -< () restrict -< tn .== (sqlInt4 $ toDBid nt') returnA -< row getNodesIdWithType :: (HasNodeError err, HasDBid NodeType) => NodeType -> Cmd err [NodeId] getNodesIdWithType nt = do ns <- runOpaQuery $ selectNodesIdWithType nt pure (map NodeId ns) selectNodesIdWithType :: HasDBid NodeType => NodeType -> Select (Column SqlInt4) selectNodesIdWithType nt = proc () -> do row@(Node _ _ tn _ _ _ _ _) <- queryNodeTable -< () restrict -< tn .== (sqlInt4 $ toDBid nt) returnA -< _node_id row ------------------------------------------------------------------------ nodeExists :: (HasNodeError err) => NodeId -> Cmd err Bool nodeExists nId = (== [PGS.Only True]) <$> runPGSQuery [sql|SELECT true FROM nodes WHERE id = ? |] (PGS.Only nId) getNode :: HasNodeError err => NodeId -> Cmd err (Node Value) getNode nId = do maybeNode <- headMay <$> runOpaQuery (selectNode (pgNodeId nId)) case maybeNode of Nothing -> nodeError (DoesNotExist nId) Just r -> pure r getNodeWith :: (HasNodeError err, JSONB a) => NodeId -> proxy a -> Cmd err (Node a) getNodeWith nId _ = do maybeNode <- headMay <$> runOpaQuery (selectNode (pgNodeId nId)) case maybeNode of Nothing -> nodeError (DoesNotExist nId) Just r -> pure r ------------------------------------------------------------------------ -- | Sugar to insert Node with NodeType in Database insertDefaultNode :: HasDBid NodeType => NodeType -> ParentId -> UserId -> Cmd err [NodeId] insertDefaultNode nt p u = insertNode nt Nothing Nothing p u insertDefaultNodeIfNotExists :: HasDBid NodeType => NodeType -> ParentId -> UserId -> Cmd err [NodeId] insertDefaultNodeIfNotExists nt p u = do children <- getChildrenByType p nt case children of [] -> insertDefaultNode nt p u xs -> pure xs insertNode :: HasDBid NodeType => NodeType -> Maybe Name -> Maybe DefaultHyperdata -> ParentId -> UserId -> Cmd err [NodeId] insertNode nt n h p u = insertNodesR [nodeW nt n h p u] nodeW :: HasDBid NodeType => NodeType -> Maybe Name -> Maybe DefaultHyperdata -> ParentId -> UserId -> NodeWrite nodeW nt n h p u = node nt n' h' (Just p) u where n' = fromMaybe (defaultName nt) n h' = maybe (defaultHyperdata nt) identity h ------------------------------------------------------------------------ node :: (ToJSON a, Hyperdata a, HasDBid NodeType) => NodeType -> Name -> a -> Maybe ParentId -> UserId -> NodeWrite node nodeType name hyperData parentId userId = Node Nothing Nothing (sqlInt4 typeId) (sqlInt4 userId) (pgNodeId <$> parentId) (sqlStrictText name) Nothing (sqlJSONB $ cs $ encode hyperData) where typeId = toDBid nodeType ------------------------------- insertNodes :: [NodeWrite] -> Cmd err Int64 insertNodes ns = mkCmd $ \conn -> runInsert_ conn $ Insert nodeTable ns rCount Nothing {- insertNodes' :: [Node a] -> Cmd err Int64 insertNodes' ns = mkCmd $ \conn -> runInsert_ conn $ Insert nodeTable ns' rCount Nothing where ns' :: [NodeWrite] ns' = map (\(Node i t u p n d h) -> Node (pgNodeId <$> i) (sqlInt4 $ toDBid t) (sqlInt4 u) (pgNodeId <$> p) (sqlStrictText n) (pgUTCTime <$> d) (pgJSONB $ cs $ encode h) ) ns -} insertNodesR :: [NodeWrite] -> Cmd err [NodeId] insertNodesR ns = mkCmd $ \conn -> runInsert_ conn (Insert nodeTable ns (rReturning (\(Node i _ _ _ _ _ _ _) -> i)) Nothing) insertNodesWithParent :: Maybe ParentId -> [NodeWrite] -> Cmd err Int64 insertNodesWithParent pid ns = insertNodes (set node_parent_id (pgNodeId <$> pid) <$> ns) insertNodesWithParentR :: Maybe ParentId -> [NodeWrite] -> Cmd err [NodeId] insertNodesWithParentR pid ns = insertNodesR (set node_parent_id (pgNodeId <$> pid) <$> ns) getCorpusPubmedAPIKey :: NodeId -> Cmd err (Maybe PUBMED.APIKey) getCorpusPubmedAPIKey cId = do res <- runPGSQuery query params pure $ (\(PGS.Only apiKey) -> apiKey) <$> head res where query :: PGS.Query query = [sql| SELECT hyperdata -> 'pubmed_api_key' FROM nodes WHERE id = ? |] params = PGS.Only cId updateCorpusPubmedAPIKey :: NodeId -> PUBMED.APIKey -> Cmd err Int64 updateCorpusPubmedAPIKey cId apiKey = execPGSQuery query params where query :: PGS.Query query = [sql| UPDATE nodes SET hyperdata = hyperdata || ? WHERE id = ? |] params = (encode $ object [ "pubmed_api_key" .= apiKey ], cId) ------------------------------------------------------------------------ -- TODO -- currently this function removes the child relation -- needs a Temporary type between Node' and NodeWriteT node2table :: HasDBid NodeType => UserId -> Maybe ParentId -> Node' -> NodeWrite node2table uid pid (Node' nt txt v []) = Node Nothing Nothing (sqlInt4 $ toDBid nt) (sqlInt4 uid) (fmap pgNodeId pid) (sqlStrictText txt) Nothing (sqlStrictJSONB $ cs $ encode v) node2table _ _ (Node' _ _ _ _) = panic "node2table: should not happen, Tree insert not implemented yet" data Node' = Node' { _n_type :: NodeType , _n_name :: Text , _n_data :: Value , _n_children :: [Node'] } deriving (Show) mkNodes :: [NodeWrite] -> Cmd err Int64 mkNodes ns = mkCmd $ \conn -> runInsert_ conn $ Insert nodeTable ns rCount Nothing mkNodeR :: [NodeWrite] -> Cmd err [NodeId] mkNodeR ns = mkCmd $ \conn -> runInsert_ conn $ Insert nodeTable ns (rReturning _node_id) Nothing ------------------------------------------------------------------------ childWith :: HasDBid NodeType => UserId -> ParentId -> Node' -> NodeWrite childWith uId pId (Node' NodeDocument txt v []) = node2table uId (Just pId) (Node' NodeDocument txt v []) childWith uId pId (Node' NodeContact txt v []) = node2table uId (Just pId) (Node' NodeContact txt v []) childWith _ _ (Node' _ _ _ _) = panic "This NodeType can not be a child" -- =================================================================== -- -- | -- CorpusDocument is a corpus made from a set of documents -- CorpusContact is a corpus made from a set of contacts (syn of Annuaire) data CorpusType = CorpusDocument | CorpusContact class MkCorpus a where mk :: HasDBid NodeType => Maybe Name -> Maybe a -> ParentId -> UserId -> Cmd err [NodeId] instance MkCorpus HyperdataCorpus where mk n Nothing p u = insertNode NodeCorpus n Nothing p u mk n (Just h) p u = insertNode NodeCorpus n (Just $ DefaultCorpus h) p u instance MkCorpus HyperdataAnnuaire where mk n Nothing p u = insertNode NodeCorpus n Nothing p u mk n (Just h) p u = insertNode NodeAnnuaire n (Just $ DefaultAnnuaire h) p u getOrMkList :: (HasNodeError err, HasDBid NodeType) => ParentId -> UserId -> Cmd err ListId getOrMkList pId uId = maybe (mkList' pId uId) (pure . view node_id) . headMay =<< getListsWithParentId pId where mkList' pId' uId' = maybe (nodeError MkNode) pure . headMay =<< insertDefaultNode NodeList pId' uId' -- | TODO remove defaultList defaultList :: (HasNodeError err, HasDBid NodeType) => CorpusId -> Cmd err ListId defaultList cId = maybe (nodeError (NoListFound cId)) (pure . view node_id) . headMay =<< getListsWithParentId cId defaultListMaybe :: (HasNodeError err, HasDBid NodeType) => CorpusId -> Cmd err (Maybe NodeId) defaultListMaybe cId = headMay <$> map (view node_id ) <$> getListsWithParentId cId getListsWithParentId :: HasDBid NodeType => NodeId -> Cmd err [Node HyperdataList] getListsWithParentId n = runOpaQuery $ selectNodesWith' n (Just NodeList)