{-| Module : Gargantext.Graph.Distances.Utils Description : Copyright : (c) CNRS, 2017-Present License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX -} {-# LANGUAGE BangPatterns #-} {-# LANGUAGE NoImplicitPrelude #-} {-# LANGUAGE FlexibleContexts #-} {-# LANGUAGE Strict #-} module Gargantext.Viz.Graph.Utils where import Data.Matrix hiding (identity) import Data.Map (Map) import qualified Data.Map as M import Data.Set (Set) import qualified Data.Set as S import Data.Vector (Vector) import qualified Data.Vector as V import qualified Data.List as L import Gargantext.Prelude ------------------------------------------------------------------------ -- | Some utils to build the matrix from cooccurrence results type Distance = Double type Cooc = Int type NgramId = Int type Index = Int -- Type Families --type Matrix' Index a --type Matrix' NgramId a data Matrice a = Matrice { matrice_fromIndex :: !(Map Index NgramId) , matrice_toIndex :: !(Map NgramId Index) , matrice :: !(Matrix a) } deriving (Show) --fromMatrice :: Matrice Double -> [(NgramId, NgramId, Double)] --fromMatrice m = undefined toMatrice :: [(NgramId, NgramId, Int)] -> Matrice Double toMatrice ns = Matrice fromIndx toIndx m where s = cooc2set ns (fromIndx, toIndx) = set2indexes s n = (length (S.toList s)) idx = toIndex toIndx ns m = matrix n n (\x -> maybe 0 identity (fromIntegral <$> M.lookup x idx)) ------------------------------------------------------------------------------- ------------------------------------------------------------------------------- toIndex :: Map NgramId Index -> [(NgramId, NgramId, a)] -> Map (Index,Index) a toIndex ni ns = to ni ns fromIndex :: Map Index NgramId -> [(Index, Index, a)] -> Map (NgramId,NgramId) a fromIndex ni ns = to ni ns ------------------------------------------------------------------------------- to :: (Ord b, Ord k) => Map k b -> [(k, k, a)] -> Map (b, b) a to index ns = M.fromList $ map (\(a1,a2,c) -> ( ( (M.!) index a1 , (M.!) index a2 ) , c ) ) ns ------------------------------------------------------------------------------- cooc2set :: [(NgramId, NgramId, a)] -> Set NgramId cooc2set cs' = foldl' (\s (a1,a2,_) -> insert [a1,a2] s ) S.empty cs' where insert as s = foldl' (\s' a -> S.insert a s') s as set2indexes :: Set NgramId -> (Map Index NgramId, Map NgramId Index) set2indexes s = (M.fromList fromIndex', M.fromList toIndex') where s' = S.toList s fromIndex' = zip [1..] s' toIndex' = zip s' [1..] ------------------------------------------------------------------------ -- Data.Vector.Additions dropAt :: Int -> Vector a -> Vector a dropAt n v = debut <> (V.tail fin) where debut = V.take n v fin = V.drop n v ------------------------------------------------------------------------ data Axis = Col | Row ---- | Matrix Algebra --data Algebra a = Point a | Vector a | Matrix a -- --multiply :: Algebra a -> Matrix a -> Matrix a --multiply (Point a) = undefined --multiply (Vector a) = undefined --multiply (Matrix a) = undefined -- --div :: Fractional a => Matrix a -> Matrix a --div m = foldl' (\m c -> divCol c m) m [1.. (ncols m)] -- where -- divCol c m = mapCol (\_ x -> 1/x) c m -- --divide :: Fractional a => Matrix a -> Matrix a -> Matrix a --divide a b = a `multStd` (div b) ------------------------------------------------------------------------ -- | Matrix functions type AxisId = Int total :: Num a => Matrix a -> a total m = V.sum $ V.map (\c -> V.sum (getCol c m)) (V.enumFromTo 1 (nOf Col m)) nOf :: Axis -> Matrix a -> Int nOf Row = nrows nOf Col = ncols axis :: Axis -> AxisId -> Matrix a -> Vector a axis Col = getCol axis Row = getRow toListsWithIndex :: Matrix a -> [((Int, Int), a)] toListsWithIndex m = concat' $ zip [1..] $ map (\c -> zip [1..] c) $ toLists m where concat' :: [(Int, [(Int, a)])] -> [((Int, Int), a)] concat' xs = L.concat $ map (\(x, ys) -> map (\(y, a) -> ((x,y), a)) ys ) xs -- | For tests only, to be removed m1 :: Matrix Double m1 = fromList 300 300 [1..]