{-| Module : Gargantext.Core.Viz.Graph.Tools.IGraph Description : Tools to build Graph Copyright : (c) CNRS, 2017-Present License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX Reference: * Gábor Csárdi, Tamás Nepusz: The igraph software package for complex network research. InterJournal Complex Systems, 1695, 2006. -} module Gargantext.Core.Viz.Graph.Tools.IGraph where import Data.Serialize import Data.Singletons (SingI) import IGraph hiding (mkGraph, neighbors, edges, nodes, Node, Graph) import Protolude import Gargantext.Core.Viz.Graph.Index import qualified Data.List as List import qualified IGraph as IG import qualified IGraph.Algorithms.Clique as IG import qualified IGraph.Algorithms.Community as IG import qualified IGraph.Algorithms.Structure as IG import qualified IGraph.Random as IG import qualified Data.Map as Map ------------------------------------------------------------------ -- | Main Types type Graph_Undirected = IG.Graph 'U () () type Graph_Directed = IG.Graph 'D () () type Node = IG.Node type Graph = IG.Graph ------------------------------------------------------------------ -- | Main Graph management Functions neighbors :: IG.Graph d v e -> IG.Node -> [IG.Node] neighbors = IG.neighbors edges :: IG.Graph d v e -> [Edge] edges = IG.edges nodes :: IG.Graph d v e -> [IG.Node] nodes = IG.nodes ------------------------------------------------------------------ -- | Partitions maximalCliques :: IG.Graph d v e -> [[Int]] maximalCliques g = IG.maximalCliques g (min',max') where min' = 0 max' = 0 ------------------------------------------------------------------ type Seed = Int spinglass :: Seed -> Map (Int, Int) Double -> IO [ClusterNode] spinglass s g = toClusterNode <$> map catMaybes <$> map (map (\n -> Map.lookup n fromI)) <$> partitions_spinglass' s g''' where g' = toIndex toI g g'' = mkGraphUfromEdges (Map.keys g') g''' = case IG.isConnected g'' of True -> g'' False -> panic "[G.C.V.G.T.Igraph: not connected graph]" (toI, fromI) = createIndices g -- | Tools to analyze graphs partitions_spinglass' :: (Serialize v, Serialize e) => Seed -> IG.Graph 'U v e -> IO [[Int]] partitions_spinglass' s g = do gen <- IG.withSeed s pure IG.findCommunity g Nothing Nothing IG.spinglass gen data ClusterNode = ClusterNode { cl_node_id :: Int , cl_community_id :: Int } toClusterNode :: [[Int]] -> [ClusterNode] toClusterNode ns = List.concat $ map (\(cId, ns') -> map (\n -> ClusterNode n cId) ns') $ List.zip [1..] ns ------------------------------------------------------------------ mkGraph :: (SingI d, Ord v, Serialize v, Serialize e) => [v] -> [LEdge e] -> IG.Graph d v e mkGraph = IG.mkGraph ------------------------------------------------------------------ mkGraphUfromEdges :: [(Int, Int)] -> Graph_Undirected mkGraphUfromEdges es = mkGraph (List.replicate n ()) $ zip es $ repeat () where (a,b) = List.unzip es n = List.length (List.nub $ a <> b) {- mkGraphDfromEdges :: [(Int, Int)] -> Graph_Directed mkGraphDfromEdges = undefined -}