{-| Module : Gargantext.Text.Parsers Description : All parsers of Gargantext in one file. Copyright : (c) CNRS, 2017 License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX Gargantext enables analyzing semi-structured text that should be parsed in order to be analyzed. The parsers suppose we know the format of the Text (TextFormat data type) according to which the right parser is chosen among the list of available parsers. This module mainly describe how to add a new parser to Gargantext, please follow the types. -} {-# LANGUAGE NoImplicitPrelude #-} {-# LANGUAGE PackageImports #-} {-# LANGUAGE OverloadedStrings #-} module Gargantext.Text.Parsers (parse, FileFormat(..), clean, parseDocs) where import System.FilePath (FilePath(), takeExtension) import "zip" Codec.Archive.Zip (withArchive, getEntry, getEntries) import Control.Monad (join) import qualified Data.Time as DT import Data.Either.Extra (partitionEithers) import Data.Time (UTCTime(..)) import Data.List (concat) import qualified Data.Map as DM import qualified Data.ByteString as DB import Data.Ord() import Data.String() import Data.Either(Either(..)) import Data.Attoparsec.ByteString (parseOnly, Parser) import Data.Text (Text) import qualified Data.Text as DT -- Activate Async for to parse in parallel import Control.Concurrent.Async as CCA (mapConcurrently) import Data.Text.Encoding (decodeUtf8) import Data.String (String()) import Data.List (lookup) ------------------------------------------------------------------------ import Gargantext.Core (Lang(..)) import Gargantext.Prelude import Gargantext.Database.Types.Node (HyperdataDocument(..)) import Gargantext.Text.Parsers.WOS (wosParser) import Gargantext.Text.Parsers.Date (parseDate) import Gargantext.Text.Parsers.CSV (parseHal) import Gargantext.Text.Terms.Stop (detectLang) ------------------------------------------------------------------------ type ParseError = String --type Field = Text --type Document = DM.Map Field Text --type FilesParsed = DM.Map FilePath FileParsed --data FileParsed = FileParsed { _fileParsed_errors :: Maybe ParseError -- , _fileParsed_result :: [Document] -- } deriving (Show) -- | According to the format of Input file, -- different parser are available. data FileFormat = WOS | CsvHalFormat -- | CsvGargV3 deriving (Show) -- Implemented (ISI Format) -- | DOC -- Not Implemented / import Pandoc -- | ODT -- Not Implemented / import Pandoc -- | PDF -- Not Implemented / pdftotext and import Pandoc ? -- | XML -- Not Implemented / see : -- -- > http://chrisdone.com/posts/fast-haskell-c-parsing-xml -- TODO: to debug maybe add the filepath in error message -- | Parse file into documents -- TODO manage errors here parseDocs :: FileFormat -> FilePath -> IO [HyperdataDocument] parseDocs WOS path = join $ mapM (toDoc WOS) <$> snd <$> parse WOS path parseDocs CsvHalFormat p = parseHal p type Year = Int type Month = Int type Day = Int -- | Parse date to Ints -- TODO add hours, minutes and seconds parseDate' :: Lang -> Maybe Text -> IO (Maybe UTCTime, (Maybe Year, Maybe Month, Maybe Day)) parseDate' _ Nothing = pure (Nothing, (Nothing, Nothing, Nothing)) parseDate' l (Just txt) = do utcTime <- parseDate l txt let (UTCTime day _) = utcTime let (y,m,d) = DT.toGregorian day pure (Just utcTime, (Just (fromIntegral y), Just m,Just d)) toDoc :: FileFormat -> [(Text, Text)] -> IO HyperdataDocument toDoc WOS d = do let abstract = lookup "abstract" d let lang = maybe EN identity (join $ detectLang <$> (fmap (DT.take 50) abstract)) let dateToParse = DT.replace "-" " " <$> lookup "PY" d <> Just " " <> lookup "publication_date" d (utcTime, (pub_year, pub_month, pub_day)) <- parseDate' lang dateToParse pure $ HyperdataDocument (Just $ DT.pack $ show WOS) (lookup "doi" d) (lookup "URL" d) Nothing Nothing Nothing (lookup "title" d) (lookup "authors" d) (lookup "source" d) (lookup "abstract" d) (fmap (DT.pack . show) utcTime) (pub_year) (pub_month) (pub_day) Nothing Nothing Nothing (Just $ (DT.pack . show) lang) toDoc _ _ = undefined parse :: FileFormat -> FilePath -> IO ([ParseError], [[(Text, Text)]]) parse format path = do files <- case takeExtension path of ".zip" -> openZip path _ -> pure <$> DB.readFile path (as, bs) <- partitionEithers <$> mapConcurrently (runParser format) files pure (as, map toText $ concat bs) where -- TODO : decode with bayesian inference on encodings toText = map (\(a,b) -> (decodeUtf8 a, decodeUtf8 b)) -- | withParser: -- According to the format of the text, choose the right parser. -- TODO withParser :: FileFormat -> Parser [Document] withParser :: FileFormat -> Parser [[(DB.ByteString, DB.ByteString)]] withParser WOS = wosParser --withParser DOC = docParser --withParser ODT = odtParser --withParser XML = xmlParser withParser _ = panic "[ERROR] Parser not implemented yet" runParser :: FileFormat -> DB.ByteString -> IO (Either String [[(DB.ByteString, DB.ByteString)]]) runParser format text = pure $ parseOnly (withParser format) text openZip :: FilePath -> IO [DB.ByteString] openZip fp = do entries <- withArchive fp (DM.keys <$> getEntries) bs <- mapConcurrently (\s -> withArchive fp (getEntry s)) entries pure bs clean :: Text -> Text clean txt = DT.map clean' txt where clean' '’' = '\'' clean' c = c