{-| Module : Gargantext.Viz.Phylo.Tools Description : Phylomemy Tools to build/manage it Copyright : (c) CNRS, 2017-Present License : AGPL + CECILL v3 Maintainer : team@gargantext.org Stability : experimental Portability : POSIX -} {-# LANGUAGE NoImplicitPrelude #-} {-# LANGUAGE FlexibleContexts #-} {-# LANGUAGE OverloadedStrings #-} module Gargantext.Viz.Phylo.Metrics.Clustering where import Data.Graph.Clustering.Louvain.CplusPlus import Data.List (last,concat,null,nub,(++),init,tail,elemIndex,groupBy,(!!)) import Data.Map (fromList,mapKeys) import Gargantext.Prelude import Gargantext.Viz.Phylo import Gargantext.Viz.Phylo.Tools -- | To apply the related components method to a PhyloGraph -- curr = the current PhyloGroup -- (nodes,edges) = the initial PhyloGraph minus the current PhyloGroup -- next = the next PhyloGroups to be added in the cluster -- memo = the memory of the allready created clusters relatedComp :: Int -> PhyloGroup -> GroupGraph -> [PhyloGroup] -> [[PhyloGroup]] -> [[PhyloGroup]] relatedComp idx curr (nodes,edges) next memo | null nodes' && null next' = memo' | (not . null) next' = relatedComp idx (head' "relatedComp1" next' ) (nodes' ,edges) (tail next') memo' | otherwise = relatedComp (idx + 1) (head' "relatedComp2" nodes') (tail nodes',edges) [] memo' where -------------------------------------- memo' :: [[PhyloGroup]] memo' | null memo = [[curr]] | idx == ((length memo) - 1) = (init memo) ++ [(last memo) ++ [curr]] | otherwise = memo ++ [[curr]] -------------------------------------- next' :: [PhyloGroup] next' = filter (\x -> not $ elem x $ concat memo) $ nub $ next ++ (getNeighbours False curr edges) -------------------------------------- nodes' :: [PhyloGroup] nodes' = filter (\x -> not $ elem x next') nodes -------------------------------------- louvain :: (GroupNodes,GroupEdges) -> IO [[PhyloGroup]] louvain (nodes,edges) = map (\community -> map (\node -> nodes !! (l_node_id node)) community) <$> groupBy (\a b -> (l_community_id a) == (l_community_id b)) <$> (cLouvain $ mapKeys (\(x,y) -> (idx x, idx y)) $ fromList edges) where -------------------------------------- idx :: PhyloGroup -> Int idx e = case elemIndex e nodes of Nothing -> panic "[ERR][Gargantext.Viz.Phylo.Metrics.Clustering] a node is missing" Just i -> i --------------------------------------