module Gargantext.API.Ngrams.List
where
-import Control.Lens hiding (elements)
+import Control.Lens hiding (elements, Indexed)
import Data.Aeson
-import Data.Map (toList, fromList)
-import Data.Swagger (ToSchema, declareNamedSchema, genericDeclareNamedSchema)
-import Data.Text (Text, concat, pack)
-import GHC.Generics (Generic)
+import Data.Either (Either(..))
+import Data.HashMap.Strict (HashMap)
+import Data.Map (Map, toList)
+import Data.Maybe (catMaybes, fromMaybe)
+import Data.Set (Set)
+import Data.Text (Text, concat, pack, splitOn)
+import Data.Vector (Vector)
import Gargantext.API.Admin.Orchestrator.Types
-import Gargantext.API.Ngrams (getNgramsTableMap, setListNgrams)
-import Gargantext.API.Ngrams.Types (RepoCmdM, Versioned(..), NgramsList)
-import Gargantext.API.Node.Corpus.New.File (FileType(..))
+import Gargantext.API.Ngrams (setListNgrams)
+import Gargantext.API.Ngrams.List.Types
+import Gargantext.API.Ngrams.Prelude (getNgramsList)
+import Gargantext.API.Ngrams.Tools (getTermsWith)
+import Gargantext.API.Ngrams.Types
import Gargantext.API.Prelude (GargServer)
-import Gargantext.Core.Utils.Prefix (unPrefixSwagger)
+import Gargantext.Core.NodeStory
+import Gargantext.Core.Text.Terms (ExtractedNgrams(..))
+import Gargantext.Core.Text.Terms.WithList (buildPatterns, termsInText)
+import Gargantext.Core.Types.Main (ListType(..))
+import Gargantext.Database.Action.Flow (saveDocNgramsWith)
import Gargantext.Database.Action.Flow.Types (FlowCmdM)
+import Gargantext.Database.Action.Metrics.NgramsByContext (getOccByNgramsOnlyFast')
+import Gargantext.Database.Admin.Types.Hyperdata.Document
import Gargantext.Database.Admin.Types.Node
-import Gargantext.Database.Schema.Ngrams (ngramsTypes)
+import Gargantext.Database.Query.Table.Node (getNode)
+import Gargantext.Database.Query.Table.NodeContext (selectDocNodes)
+import Gargantext.Database.Schema.Context
+import Gargantext.Database.Schema.Ngrams
+import Gargantext.Database.Schema.Node (_node_parent_id)
+import Gargantext.Database.Types (Indexed(..))
import Gargantext.Prelude
import Network.HTTP.Media ((//), (/:))
import Servant
import Servant.Job.Async
-import Servant.Job.Utils (jsonOptions)
-import Web.FormUrlEncoded (FromForm)
+import qualified Data.ByteString.Lazy as BSL
+import qualified Data.Csv as Csv
+import qualified Data.HashMap.Strict as HashMap
+import qualified Data.List as List
+import qualified Data.Map as Map
+import qualified Data.Set as Set
+import qualified Data.Text as Text
+import qualified Data.Vector as Vec
+import qualified Prelude
+import qualified Protolude as P
------------------------------------------------------------------------
-
-------------------------------------------------------------------------
-type API = Get '[JSON, HTML] (Headers '[Header "Content-Disposition" Text] NgramsList)
- -- :<|> ReqBody '[JSON] NgramsList :> Post '[JSON] Bool
- :<|> PostAPI
-
-api :: ListId -> GargServer API
-api l = get l :<|> postAsync l
+type GETAPI = Summary "Get List"
+ :> "lists"
+ :> Capture "listId" ListId
+ :> Get '[JSON, HTML] (Headers '[Header "Content-Disposition" Text] NgramsList)
+getApi :: GargServer GETAPI
+getApi = get
data HTML
instance Accept HTML where
instance ToJSON a => MimeRender HTML a where
mimeRender _ = encode
+----------------------
+type JSONAPI = Summary "Update List"
+ :> "lists"
+ :> Capture "listId" ListId
+ :> "add"
+ :> "form"
+ :> "async"
+ :> AsyncJobs JobLog '[FormUrlEncoded] WithFile JobLog
+
+jsonApi :: GargServer JSONAPI
+jsonApi = postAsync
+
+----------------------
+type CSVAPI = Summary "Update List (legacy v3 CSV)"
+ :> "lists"
+ :> Capture "listId" ListId
+ :> "csv"
+ :> "add"
+ :> "form"
+ :> "async"
+ :> AsyncJobs JobLog '[FormUrlEncoded] WithTextFile JobLog
+
+csvApi :: GargServer CSVAPI
+csvApi = csvPostAsync
+
------------------------------------------------------------------------
-get :: RepoCmdM env err m =>
+get :: HasNodeStory env err m =>
ListId -> m (Headers '[Header "Content-Disposition" Text] NgramsList)
get lId = do
- lst <- get' lId
- let (NodeId id) = lId
+ lst <- getNgramsList lId
+ let (NodeId id') = lId
return $ addHeader (concat [ "attachment; filename=GarganText_NgramsList-"
- , pack $ show id
+ , pack $ show id'
, ".json"
]
) lst
-get' :: RepoCmdM env err m
- => ListId -> m NgramsList
-get' lId = fromList
- <$> zip ngramsTypes
- <$> mapM (getNgramsTableMap lId) ngramsTypes
-
------------------------------------------------------------------------
-- TODO : purge list
-- TODO talk
-post :: FlowCmdM env err m
+setList :: FlowCmdM env err m
=> ListId
-> NgramsList
-> m Bool
-post l m = do
+setList l m = do
-- TODO check with Version for optim
+ printDebug "New list as file" l
_ <- mapM (\(nt, Versioned _v ns) -> setListNgrams l nt ns) $ toList m
-- TODO reindex
pure True
------------------------------------------------------------------------
+-- | Re-index documents of a corpus with new ngrams (called orphans here)
+reIndexWith :: ( HasNodeStory env err m
+ , FlowCmdM env err m
+ )
+ => CorpusId
+ -> ListId
+ -> NgramsType
+ -> Set ListType
+ -> m ()
+reIndexWith cId lId nt lts = do
+ -- Getting [NgramsTerm]
+ ts <- List.concat
+ <$> map (\(k,vs) -> k:vs)
+ <$> HashMap.toList
+ <$> getTermsWith identity [lId] nt lts
+
+ -- printDebug "ts" ts
+
+ -- Taking the ngrams with 0 occurrences only (orphans)
+ occs <- getOccByNgramsOnlyFast' cId lId nt ts
+
+ -- printDebug "occs" occs
+
+ let orphans = List.concat
+ $ map (\t -> case HashMap.lookup t occs of
+ Nothing -> [t]
+ Just n -> if n <= 1 then [t] else [ ]
+ ) ts
+
+ -- printDebug "orphans" orphans
+
+ -- Get all documents of the corpus
+ docs <- selectDocNodes cId
+ -- printDebug "docs length" (List.length docs)
+
+ -- Checking Text documents where orphans match
+ -- TODO Tests here
+ let
+ ngramsByDoc = map (HashMap.fromList)
+ $ map (map (\(k,v) -> (SimpleNgrams (text2ngrams k), v)))
+ $ map (\doc -> List.zip
+ (termsInText (buildPatterns $ map (\k -> (Text.splitOn " " $ unNgramsTerm k, [])) orphans)
+ $ Text.unlines $ catMaybes
+ [ doc ^. context_hyperdata . hd_title
+ , doc ^. context_hyperdata . hd_abstract
+ ]
+ )
+ (List.cycle [Map.fromList $ [(nt, Map.singleton (doc ^. context_id) 1 )]])
+ ) docs
+
+ -- printDebug "ngramsByDoc" ngramsByDoc
+
+ -- Saving the indexation in database
+ _ <- mapM (saveDocNgramsWith lId) ngramsByDoc
+
+ pure () -- ngramsByDoc
+
+toIndexedNgrams :: HashMap Text NgramsId -> Text -> Maybe (Indexed Int Ngrams)
+toIndexedNgrams m t = Indexed <$> i <*> n
+ where
+ i = HashMap.lookup t m
+ n = Just (text2ngrams t)
+
------------------------------------------------------------------------
type PostAPI = Summary "Update List"
:> "add"
:> "async"
:> AsyncJobs JobLog '[FormUrlEncoded] WithFile JobLog
-postAsync :: ListId -> GargServer PostAPI
+postAsync :: GargServer JSONAPI
postAsync lId =
serveJobsAPI $
- JobFunction (\f log' -> postAsync' lId f (liftBase . log'))
+ JobFunction (\f log' ->
+ let
+ log'' x = do
+ -- printDebug "postAsync ListId" x
+ liftBase $ log' x
+ in postAsync' lId f log'')
postAsync' :: FlowCmdM env err m
=> ListId
logStatus JobLog { _scst_succeeded = Just 0
, _scst_failed = Just 0
- , _scst_remaining = Just 1
+ , _scst_remaining = Just 2
, _scst_events = Just []
}
- _r <- post l m
+ printDebug "New list as file" l
+ _ <- setList l m
+ -- printDebug "Done" r
- pure JobLog { _scst_succeeded = Just 1
+ logStatus JobLog { _scst_succeeded = Just 1
+ , _scst_failed = Just 0
+ , _scst_remaining = Just 1
+ , _scst_events = Just []
+ }
+
+
+ corpus_node <- getNode l -- (Proxy :: Proxy HyperdataList)
+ let corpus_id = fromMaybe (panic "") (_node_parent_id corpus_node)
+ _ <- reIndexWith corpus_id l NgramsTerms (Set.fromList [MapTerm, CandidateTerm])
+
+ pure JobLog { _scst_succeeded = Just 2
, _scst_failed = Just 0
, _scst_remaining = Just 0
, _scst_events = Just []
}
-data WithFile = WithFile
- { _wf_filetype :: !FileType
- , _wf_data :: !NgramsList
- , _wf_name :: !Text
- } deriving (Eq, Show, Generic)
-makeLenses ''WithFile
-instance FromForm WithFile
-instance FromJSON WithFile where
- parseJSON = genericParseJSON $ jsonOptions "_wf_"
-instance ToSchema WithFile where
- declareNamedSchema = genericDeclareNamedSchema (unPrefixSwagger "_wf_")
+------------------------------------------------------------------------
+type CSVPostAPI = Summary "Update List (legacy v3 CSV)"
+ :> "csv"
+ :> "add"
+ :> "form"
+ :> "async"
+ :> AsyncJobs JobLog '[FormUrlEncoded] WithFile JobLog
+
+readCsvText :: Text -> [(Text, Text, Text)]
+readCsvText t = case eDec of
+ Left _ -> []
+ Right dec -> Vec.toList dec
+ where
+ lt = BSL.fromStrict $ P.encodeUtf8 t
+ eDec = Csv.decodeWith
+ (Csv.defaultDecodeOptions { Csv.decDelimiter = fromIntegral (P.ord '\t') })
+ Csv.HasHeader lt :: Either Prelude.String (Vector (Text, Text, Text))
+
+parseCsvData :: [(Text, Text, Text)] -> Map NgramsTerm NgramsRepoElement
+parseCsvData lst = Map.fromList $ conv <$> lst
+ where
+ conv (status, label, forms) =
+ (NgramsTerm label, NgramsRepoElement { _nre_size = 1
+ , _nre_list = case status == "map" of
+ True -> MapTerm
+ False -> case status == "main" of
+ True -> CandidateTerm
+ False -> StopTerm
+ , _nre_root = Nothing
+ , _nre_parent = Nothing
+ , _nre_children = MSet
+ $ Map.fromList
+ $ map (\form -> (NgramsTerm form, ()))
+ $ filter (/= "")
+ $ splitOn "|&|" forms
+ }
+ )
+
+csvPost :: FlowCmdM env err m
+ => ListId
+ -> Text
+ -> m Bool
+csvPost l m = do
+ printDebug "[csvPost] l" l
+ -- printDebug "[csvPost] m" m
+ -- status label forms
+ let lst = readCsvText m
+ let p = parseCsvData lst
+ --printDebug "[csvPost] lst" lst
+ printDebug "[csvPost] p" p
+ _ <- setListNgrams l NgramsTerms p
+ printDebug "ReIndexing List" l
+ corpus_node <- getNode l -- (Proxy :: Proxy HyperdataList)
+ let corpus_id = fromMaybe (panic "") (_node_parent_id corpus_node)
+ _ <- reIndexWith corpus_id l NgramsTerms (Set.fromList [MapTerm, CandidateTerm])
+
+ pure True
+
+------------------------------------------------------------------------
+csvPostAsync :: GargServer CSVAPI
+csvPostAsync lId =
+ serveJobsAPI $
+ JobFunction $ \f@(WithTextFile ft _ n) log' -> do
+ let log'' x = do
+ printDebug "[csvPostAsync] filetype" ft
+ printDebug "[csvPostAsync] name" n
+ liftBase $ log' x
+ csvPostAsync' lId f log''
+
+
+csvPostAsync' :: FlowCmdM env err m
+ => ListId
+ -> WithTextFile
+ -> (JobLog -> m ())
+ -> m JobLog
+csvPostAsync' l (WithTextFile _ m _) logStatus = do
+ logStatus JobLog { _scst_succeeded = Just 0
+ , _scst_failed = Just 0
+ , _scst_remaining = Just 1
+ , _scst_events = Just []
+ }
+ _r <- csvPost l m
+ pure JobLog { _scst_succeeded = Just 1
+ , _scst_failed = Just 0
+ , _scst_remaining = Just 0
+ , _scst_events = Just []
+ }
+------------------------------------------------------------------------