{-# LANGUAGE FlexibleContexts #-}
{-# LANGUAGE OverloadedStrings #-}
{-# LANGUAGE MultiParamTypeClasses #-}
+{-# LANGUAGE TypeSynonymInstances #-}
+{-# LANGUAGE FlexibleInstances #-}
+
+module Gargantext.Viz.Phylo.PhyloExport where
+
+import Data.Map (Map, fromList, empty, fromListWith, insert, (!), elems, unionWith, findWithDefault, toList)
+import Data.List ((++), sort, nub, concat, sortOn, reverse, groupBy, union, (\\), (!!), init, partition, unwords, nubBy, inits, elemIndex)
+import Data.Vector (Vector)
+
+import Prelude (writeFile)
+import Gargantext.Prelude
+import Gargantext.Viz.AdaptativePhylo
+import Gargantext.Viz.Phylo.PhyloTools
+
+import Control.Lens
+import Data.GraphViz hiding (DotGraph, Order)
+import Data.GraphViz.Types.Generalised (DotGraph)
+import Data.GraphViz.Attributes.Complete hiding (EdgeType, Order)
+import Data.GraphViz.Types.Monadic
+import Data.Text.Lazy (fromStrict, pack, unpack)
+import System.FilePath
+import Debug.Trace (trace)
+
+import qualified Data.Text as Text
+import qualified Data.Vector as Vector
+import qualified Data.Text.Lazy as Lazy
+import qualified Data.GraphViz.Attributes.HTML as H
+
+--------------------
+-- | Dot export | --
+--------------------
+
+dotToFile :: FilePath -> DotGraph DotId -> IO ()
+dotToFile filePath dotG = writeFile filePath $ dotToString dotG
+
+dotToString :: DotGraph DotId -> [Char]
+dotToString dotG = unpack (printDotGraph dotG)
+
+dynamicToColor :: Double -> H.Attribute
+dynamicToColor d
+ | d == 0 = H.BGColor (toColor LightCoral)
+ | d == 1 = H.BGColor (toColor Khaki)
+ | d == 2 = H.BGColor (toColor SkyBlue)
+ | otherwise = H.Color (toColor Black)
+
+pickLabelColor :: [Double] -> H.Attribute
+pickLabelColor lst
+ | elem 0 lst = dynamicToColor 0
+ | elem 2 lst = dynamicToColor 2
+ | elem 1 lst = dynamicToColor 1
+ | otherwise = dynamicToColor 3
+
+toDotLabel :: Text.Text -> Label
+toDotLabel lbl = StrLabel $ fromStrict lbl
+
+toAttr :: AttributeName -> Lazy.Text -> CustomAttribute
+toAttr k v = customAttribute k v
+
+metaToAttr :: Map Text.Text [Double] -> [CustomAttribute]
+metaToAttr meta = map (\(k,v) -> toAttr (fromStrict k) $ (pack . unwords) $ map show v) $ toList meta
+
+groupIdToDotId :: PhyloGroupId -> DotId
+groupIdToDotId (((d,d'),lvl),idx) = (fromStrict . Text.pack) $ ("group" <> (show d) <> (show d') <> (show lvl) <> (show idx))
+
+branchIdToDotId :: PhyloBranchId -> DotId
+branchIdToDotId bId = (fromStrict . Text.pack) $ ("branch" <> show (snd bId))
+
+periodIdToDotId :: PhyloPeriodId -> DotId
+periodIdToDotId prd = (fromStrict . Text.pack) $ ("period" <> show (fst prd) <> show (snd prd))
+
+groupToTable :: Vector Ngrams -> PhyloGroup -> H.Label
+groupToTable fdt g = H.Table H.HTable
+ { H.tableFontAttrs = Just [H.PointSize 14, H.Align H.HLeft]
+ , H.tableAttrs = [H.Border 0, H.CellBorder 0, H.BGColor (toColor White)]
+ , H.tableRows = [header]
+ <> [H.Cells [H.LabelCell [H.Height 10] $ H.Text [H.Str $ fromStrict ""]]]
+ <> ( map ngramsToRow $ splitEvery 4
+ $ reverse $ sortOn (snd . snd)
+ $ zip (ngramsToText fdt (g ^. phylo_groupNgrams))
+ $ zip ((g ^. phylo_groupMeta) ! "dynamics") ((g ^. phylo_groupMeta) ! "inclusion"))}
+ where
+ --------------------------------------
+ ngramsToRow :: [(Ngrams,(Double,Double))] -> H.Row
+ ngramsToRow ns = H.Cells $ map (\(n,(d,_)) ->
+ H.LabelCell [H.Align H.HLeft,dynamicToColor d] $ H.Text [H.Str $ fromStrict n]) ns
+ --------------------------------------
+ header :: H.Row
+ header =
+ H.Cells [ H.LabelCell [pickLabelColor ((g ^. phylo_groupMeta) ! "dynamics")]
+ $ H.Text [H.Str $ (((fromStrict . Text.toUpper) $ g ^. phylo_groupLabel)
+ <> (fromStrict " ( ")
+ <> (pack $ show (fst $ g ^. phylo_groupPeriod))
+ <> (fromStrict " , ")
+ <> (pack $ show (snd $ g ^. phylo_groupPeriod))
+ <> (fromStrict " ) ")
+ <> (pack $ show (getGroupId g)))]]
+ --------------------------------------
+
+branchToDotNode :: PhyloBranch -> Int -> Dot DotId
+branchToDotNode b bId =
+ node (branchIdToDotId $ b ^. branch_id)
+ ([FillColor [toWColor CornSilk], FontName "Arial", FontSize 40, Shape Egg, Style [SItem Bold []], Label (toDotLabel $ b ^. branch_label)]
+ <> (metaToAttr $ b ^. branch_meta)
+ <> [ toAttr "nodeType" "branch"
+ , toAttr "bId" (pack $ show bId)
+ , toAttr "branchId" (pack $ unwords (map show $ snd $ b ^. branch_id))
+ , toAttr "branch_x" (fromStrict $ Text.pack $ (show $ b ^. branch_x))
+ , toAttr "branch_y" (fromStrict $ Text.pack $ (show $ b ^. branch_y))
+ , toAttr "label" (pack $ show $ b ^. branch_label)
+ ])
+
+periodToDotNode :: (Date,Date) -> Dot DotId
+periodToDotNode prd =
+ node (periodIdToDotId prd)
+ ([Shape BoxShape, FontSize 50, Label (toDotLabel $ Text.pack (show (fst prd) <> " " <> show (snd prd)))]
+ <> [ toAttr "nodeType" "period"
+ , toAttr "from" (fromStrict $ Text.pack $ (show $ fst prd))
+ , toAttr "to" (fromStrict $ Text.pack $ (show $ snd prd))])
+
+
+groupToDotNode :: Vector Ngrams -> PhyloGroup -> Int -> Dot DotId
+groupToDotNode fdt g bId =
+ node (groupIdToDotId $ getGroupId g)
+ ([FontName "Arial", Shape Square, penWidth 4, toLabel (groupToTable fdt g)]
+ <> [ toAttr "nodeType" "group"
+ , toAttr "from" (pack $ show (fst $ g ^. phylo_groupPeriod))
+ , toAttr "to" (pack $ show (snd $ g ^. phylo_groupPeriod))
+ , toAttr "branchId" (pack $ unwords (init $ map show $ snd $ g ^. phylo_groupBranchId))
+ , toAttr "bId" (pack $ show bId)
+ , toAttr "support" (pack $ show (g ^. phylo_groupSupport))])
+
+
+toDotEdge :: DotId -> DotId -> Text.Text -> EdgeType -> Dot DotId
+toDotEdge source target lbl edgeType = edge source target
+ (case edgeType of
+ GroupToGroup -> [ Width 3, penWidth 4, Color [toWColor Black], Constraint True
+ , Label (StrLabel $ fromStrict lbl)] <> [toAttr "edgeType" "link" ]
+ BranchToGroup -> [ Width 3, Color [toWColor Black], ArrowHead (AType [(ArrMod FilledArrow RightSide,DotArrow)])
+ , Label (StrLabel $ fromStrict lbl)] <> [toAttr "edgeType" "branchLink" ]
+ BranchToBranch -> [ Width 2, Color [toWColor Black], Style [SItem Dashed []], ArrowHead (AType [(ArrMod FilledArrow BothSides,DotArrow)])
+ , Label (StrLabel $ fromStrict lbl)]
+ PeriodToPeriod -> [ Width 5, Color [toWColor Black]])
+
+
+mergePointers :: [PhyloGroup] -> Map (PhyloGroupId,PhyloGroupId) Double
+mergePointers groups =
+ let toChilds = fromList $ concat $ map (\g -> map (\(target,w) -> ((getGroupId g,target),w)) $ g ^. phylo_groupPeriodChilds) groups
+ toParents = fromList $ concat $ map (\g -> map (\(target,w) -> ((target,getGroupId g),w)) $ g ^. phylo_groupPeriodParents) groups
+ in unionWith (\w w' -> max w w') toChilds toParents
+
+
+toBid :: PhyloGroup -> [PhyloBranch] -> Int
+toBid g bs =
+ let b' = head' "toBid" (filter (\b -> b ^. branch_id == g ^. phylo_groupBranchId) bs)
+ in fromJust $ elemIndex b' bs
+
+exportToDot :: Phylo -> PhyloExport -> DotGraph DotId
+exportToDot phylo export =
+ trace ("\n-- | Convert " <> show(length $ export ^. export_branches) <> " branches and "
+ <> show(length $ export ^. export_groups) <> " groups "
+ <> show(length $ nub $ concat $ map (\g -> g ^. phylo_groupNgrams) $ export ^. export_groups) <> " terms to a dot file\n\n"
+ <> "##########################") $
+ digraph ((Str . fromStrict) $ (phyloName $ getConfig phylo)) $ do
+
+ -- | 1) init the dot graph
+ graphAttrs ( [ Label (toDotLabel $ (phyloName $ getConfig phylo))]
+ <> [ FontSize 30, LabelLoc VTop, NodeSep 1, RankSep [1], Rank SameRank, Splines SplineEdges, Overlap ScaleOverlaps
+ , Ratio FillRatio
+ , Style [SItem Filled []],Color [toWColor White]]
+ -- | home made attributes
+ <> [(toAttr (fromStrict "phyloFoundations") $ pack $ show (length $ Vector.toList $ getRoots phylo))
+ ,(toAttr (fromStrict "phyloTerms") $ pack $ show (length $ nub $ concat $ map (\g -> g ^. phylo_groupNgrams) $ export ^. export_groups))
+ ,(toAttr (fromStrict "phyloDocs") $ pack $ show (sum $ elems $ phylo ^. phylo_timeDocs))
+ ,(toAttr (fromStrict "phyloPeriods") $ pack $ show (length $ elems $ phylo ^. phylo_periods))
+ ,(toAttr (fromStrict "phyloBranches") $ pack $ show (length $ export ^. export_branches))
+ ,(toAttr (fromStrict "phyloGroups") $ pack $ show (length $ export ^. export_groups))
+ ])
+
+
+ -- toAttr (fromStrict k) $ (pack . unwords) $ map show v
+
+ -- | 2) create a layer for the branches labels
+ subgraph (Str "Branches peaks") $ do
+
+ graphAttrs [Rank SameRank]
+
+ -- | 3) group the branches by hierarchy
+ -- mapM (\branches ->
+ -- subgraph (Str "Branches clade") $ do
+ -- graphAttrs [Rank SameRank]
+
+ -- -- | 4) create a node for each branch
+ -- mapM branchToDotNode branches
+ -- ) $ elems $ fromListWith (++) $ map (\b -> ((init . snd) $ b ^. branch_id,[b])) $ export ^. export_branches
+
+ mapM (\b -> branchToDotNode b (fromJust $ elemIndex b (export ^. export_branches))) $ export ^. export_branches
+
+ -- | 5) create a layer for each period
+ _ <- mapM (\period ->
+ subgraph ((Str . fromStrict . Text.pack) $ ("Period" <> show (fst period) <> show (snd period))) $ do
+ graphAttrs [Rank SameRank]
+ periodToDotNode period
+
+ -- | 6) create a node for each group
+ mapM (\g -> groupToDotNode (getRoots phylo) g (toBid g (export ^. export_branches))) (filter (\g -> g ^. phylo_groupPeriod == period) $ export ^. export_groups)
+ ) $ getPeriodIds phylo
+
+ -- | 7) create the edges between a branch and its first groups
+ _ <- mapM (\(bId,groups) ->
+ mapM (\g -> toDotEdge (branchIdToDotId bId) (groupIdToDotId $ getGroupId g) "" BranchToGroup) groups
+ )
+ $ toList
+ $ map (\groups -> head' "toDot"
+ $ groupBy (\g g' -> g' ^. phylo_groupPeriod == g ^. phylo_groupPeriod)
+ $ sortOn (fst . _phylo_groupPeriod) groups)
+ $ fromListWith (++) $ map (\g -> (g ^. phylo_groupBranchId,[g])) $ export ^. export_groups
+
+ -- | 8) create the edges between the groups
+ _ <- mapM (\((k,k'),_) ->
+ toDotEdge (groupIdToDotId k) (groupIdToDotId k') "" GroupToGroup
+ ) $ (toList . mergePointers) $ export ^. export_groups
+
+ -- | 7) create the edges between the periods
+ _ <- mapM (\(prd,prd') ->
+ toDotEdge (periodIdToDotId prd) (periodIdToDotId prd') "" PeriodToPeriod
+ ) $ nubBy (\combi combi' -> fst combi == fst combi') $ listToCombi' $ getPeriodIds phylo
+
+ -- | 8) create the edges between the branches
+ -- _ <- mapM (\(bId,bId') ->
+ -- toDotEdge (branchIdToDotId bId) (branchIdToDotId bId')
+ -- (Text.pack $ show(branchIdsToProximity bId bId'
+ -- (getThresholdInit $ phyloProximity $ getConfig phylo)
+ -- (getThresholdStep $ phyloProximity $ getConfig phylo))) BranchToBranch
+ -- ) $ nubBy (\combi combi' -> fst combi == fst combi') $ listToCombi' $ map _branch_id $ export ^. export_branches
+
+
+ graphAttrs [Rank SameRank]
+
+
+
+
+
+----------------
+-- | Filter | --
+----------------
+
+filterByBranchSize :: Double -> PhyloExport -> PhyloExport
+filterByBranchSize thr export =
+ let branches' = partition (\b -> head' "filter" ((b ^. branch_meta) ! "size") >= thr) $ export ^. export_branches
+ in export & export_branches .~ (fst branches')
+ & export_groups %~ (filter (\g -> not $ elem (g ^. phylo_groupBranchId) (map _branch_id $ snd branches')))
+
+
+processFilters :: [Filter] -> Quality -> PhyloExport -> PhyloExport
+processFilters filters qua export =
+ foldl (\export' f -> case f of
+ ByBranchSize thr -> if (thr < (fromIntegral $ qua ^. qua_minBranch))
+ then filterByBranchSize (fromIntegral $ qua ^. qua_minBranch) export'
+ else filterByBranchSize thr export'
+ ) export filters
+
+--------------
+-- | Sort | --
+--------------
+
+branchToIso :: [PhyloBranch] -> [PhyloBranch]
+branchToIso branches =
+ let steps = map sum
+ $ inits
+ $ map (\(b,x) -> b ^. branch_y + 0.05 - x)
+ $ zip branches
+ $ ([0] ++ (map (\(b,b') ->
+ let idx = length $ commonPrefix (b ^. branch_canonId) (b' ^. branch_canonId) []
+ in (b' ^. branch_seaLevel) !! (idx - 1)
+ ) $ listToSeq branches))
+ in map (\(x,b) -> b & branch_x .~ x)
+ $ zip steps branches
+
+
+sortByHierarchy :: Int -> [PhyloBranch] -> [PhyloBranch]
+sortByHierarchy depth branches =
+ if (length branches == 1)
+ then branchToIso branches
+ else branchToIso $ concat
+ $ map (\branches' ->
+ let partitions = partition (\b -> depth + 1 == ((length . snd) $ b ^. branch_id)) branches'
+ in (sortOn (\b -> (b ^. branch_meta) ! "birth") (fst partitions))
+ ++ (sortByHierarchy (depth + 1) (snd partitions)))
+ $ groupBy (\b b' -> ((take depth . snd) $ b ^. branch_id) == ((take depth . snd) $ b' ^. branch_id) )
+ $ sortOn (\b -> (take depth . snd) $ b ^. branch_id) branches
+
+
+sortByBirthDate :: Order -> PhyloExport -> PhyloExport
+sortByBirthDate order export =
+ let branches = sortOn (\b -> (b ^. branch_meta) ! "birth") $ export ^. export_branches
+ branches' = case order of
+ Asc -> branches
+ Desc -> reverse branches
+ in export & export_branches .~ branches'
+
+processSort :: Sort -> PhyloExport -> PhyloExport
+processSort sort' export = case sort' of
+ ByBirthDate o -> sortByBirthDate o export
+ ByHierarchy -> export & export_branches .~ sortByHierarchy 0 (export ^. export_branches)
+
+
+-----------------
+-- | Metrics | --
+-----------------
+
+-- | Return the conditional probability of i knowing j
+conditional :: Ord a => Map (a,a) Double -> a -> a -> Double
+conditional m i j = (findWithDefault 0 (i,j) m)
+ / (m ! (j,j))
+
+
+-- | Return the genericity score of a given ngram
+genericity :: Map (Int, Int) Double -> [Int] -> Int -> Double
+genericity m l i = ( (sum $ map (\j -> conditional m i j) l)
+ - (sum $ map (\j -> conditional m j i) l)) / (fromIntegral $ (length l) + 1)
+
+
+-- | Return the specificity score of a given ngram
+specificity :: Map (Int, Int) Double -> [Int] -> Int -> Double
+specificity m l i = ( (sum $ map (\j -> conditional m j i) l)
+ - (sum $ map (\j -> conditional m i j) l)) / (fromIntegral $ (length l) + 1)
+
+
+-- | Return the inclusion score of a given ngram
+inclusion :: Map (Int, Int) Double -> [Int] -> Int -> Double
+inclusion m l i = ( (sum $ map (\j -> conditional m j i) l)
+ + (sum $ map (\j -> conditional m i j) l)) / (fromIntegral $ (length l) + 1)
+
+
+ngramsMetrics :: PhyloExport -> PhyloExport
+ngramsMetrics export =
+ over ( export_groups
+ . traverse )
+ (\g -> g & phylo_groupMeta %~ insert "genericity"
+ (map (\n -> genericity (g ^. phylo_groupCooc) ((g ^. phylo_groupNgrams) \\ [n]) n) $ g ^. phylo_groupNgrams)
+ & phylo_groupMeta %~ insert "specificity"
+ (map (\n -> specificity (g ^. phylo_groupCooc) ((g ^. phylo_groupNgrams) \\ [n]) n) $ g ^. phylo_groupNgrams)
+ & phylo_groupMeta %~ insert "inclusion"
+ (map (\n -> inclusion (g ^. phylo_groupCooc) ((g ^. phylo_groupNgrams) \\ [n]) n) $ g ^. phylo_groupNgrams)
+ ) export
+
+
+branchDating :: PhyloExport -> PhyloExport
+branchDating export =
+ over ( export_branches
+ . traverse )
+ (\b ->
+ let groups = sortOn fst
+ $ foldl' (\acc g -> if (g ^. phylo_groupBranchId == b ^. branch_id)
+ then acc ++ [g ^. phylo_groupPeriod]
+ else acc ) [] $ export ^. export_groups
+ periods = nub groups
+ birth = fst $ head' "birth" groups
+ age = (snd $ last' "age" groups) - birth
+ in b & branch_meta %~ insert "birth" [fromIntegral birth]
+ & branch_meta %~ insert "age" [fromIntegral age]
+ & branch_meta %~ insert "size" [fromIntegral $ length periods] ) export
+
+processMetrics :: PhyloExport -> PhyloExport
+processMetrics export = ngramsMetrics
+ $ branchDating export
+
+
+-----------------
+-- | Taggers | --
+-----------------
+
+getNthMostMeta :: Int -> [Double] -> [Int] -> [Int]
+getNthMostMeta nth meta ns = map (\(idx,_) -> (ns !! idx))
+ $ take nth
+ $ reverse
+ $ sortOn snd $ zip [0..] meta
+
+
+mostInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport
+mostInclusive nth foundations export =
+ over ( export_branches
+ . traverse )
+ (\b ->
+ let groups = filter (\g -> g ^. phylo_groupBranchId == b ^. branch_id) $ export ^. export_groups
+ cooc = foldl (\acc g -> unionWith (+) acc (g ^. phylo_groupCooc)) empty groups
+ ngrams = sort $ foldl (\acc g -> union acc (g ^. phylo_groupNgrams)) [] groups
+ inc = map (\n -> inclusion cooc (ngrams \\ [n]) n) ngrams
+ lbl = ngramsToLabel foundations $ getNthMostMeta nth inc ngrams
+ in b & branch_label .~ lbl ) export
+
+
+mostEmergentInclusive :: Int -> Vector Ngrams -> PhyloExport -> PhyloExport
+mostEmergentInclusive nth foundations export =
+ over ( export_groups
+ . traverse )
+ (\g ->
+ let lbl = ngramsToLabel foundations
+ $ take nth
+ $ map (\(_,(_,idx)) -> idx)
+ $ concat
+ $ map (\groups -> sortOn (fst . snd) groups)
+ $ groupBy ((==) `on` fst) $ reverse $ sortOn fst
+ $ zip ((g ^. phylo_groupMeta) ! "inclusion")
+ $ zip ((g ^. phylo_groupMeta) ! "dynamics") (g ^. phylo_groupNgrams)
+ in g & phylo_groupLabel .~ lbl ) export
+
+
+processLabels :: [PhyloLabel] -> Vector Ngrams -> PhyloExport -> PhyloExport
+processLabels labels foundations export =
+ foldl (\export' label ->
+ case label of
+ GroupLabel tagger nth ->
+ case tagger of
+ MostEmergentInclusive -> mostEmergentInclusive nth foundations export'
+ _ -> panic "[ERR][Viz.Phylo.PhyloExport] unknown tagger"
+ BranchLabel tagger nth ->
+ case tagger of
+ MostInclusive -> mostInclusive nth foundations export'
+ _ -> panic "[ERR][Viz.Phylo.PhyloExport] unknown tagger" ) export labels
+
+
+------------------
+-- | Dynamics | --
+------------------
+
+
+toDynamics :: Int -> [PhyloGroup] -> PhyloGroup -> Map Int (Date,Date) -> Double
+toDynamics n parents g m =
+ let prd = g ^. phylo_groupPeriod
+ end = last' "dynamics" (sort $ map snd $ elems m)
+ in if (((snd prd) == (snd $ m ! n)) && (snd prd /= end))
+ -- | decrease
+ then 2
+ else if ((fst prd) == (fst $ m ! n))
+ -- | recombination
+ then 0
+ else if isNew
+ -- | emergence
+ then 1
+ else 3
+ where
+ --------------------------------------
+ isNew :: Bool
+ isNew = not $ elem n $ concat $ map _phylo_groupNgrams parents
+
+
+processDynamics :: [PhyloGroup] -> [PhyloGroup]
+processDynamics groups =
+ map (\g ->
+ let parents = filter (\g' -> (g ^. phylo_groupBranchId == g' ^. phylo_groupBranchId)
+ && ((fst $ g ^. phylo_groupPeriod) > (fst $ g' ^. phylo_groupPeriod))) groups
+ in g & phylo_groupMeta %~ insert "dynamics" (map (\n -> toDynamics n parents g mapNgrams) $ g ^. phylo_groupNgrams) ) groups
+ where
+ --------------------------------------
+ mapNgrams :: Map Int (Date,Date)
+ mapNgrams = map (\dates ->
+ let dates' = sort dates
+ in (head' "dynamics" dates', last' "dynamics" dates'))
+ $ fromListWith (++)
+ $ foldl (\acc g -> acc ++ ( map (\n -> (n,[fst $ g ^. phylo_groupPeriod, snd $ g ^. phylo_groupPeriod]))
+ $ (g ^. phylo_groupNgrams))) [] groups
+
+
+---------------------
+-- | phyloExport | --
+---------------------
+
+toPhyloExport :: Phylo -> DotGraph DotId
+toPhyloExport phylo = exportToDot phylo
+ $ processFilters (exportFilter $ getConfig phylo) (phyloQuality $ getConfig phylo)
+ $ processSort (exportSort $ getConfig phylo)
+ $ processLabels (exportLabel $ getConfig phylo) (getRoots phylo)
+ $ processMetrics export
+ where
+ export :: PhyloExport
+ export = PhyloExport groups branches
+ --------------------------------------
+ branches :: [PhyloBranch]
+ branches = map (\g ->
+ let seaLvl = (g ^. phylo_groupMeta) ! "seaLevels"
+ breaks = (g ^. phylo_groupMeta) ! "breaks"
+ canonId = take (round $ (last' "export" breaks) + 2) (snd $ g ^. phylo_groupBranchId)
+ in PhyloBranch (g ^. phylo_groupBranchId)
+ canonId
+ seaLvl
+ 0
+ (last' "export" (take (round $ (last' "export" breaks) + 1) seaLvl))
+ 0
+ 0
+ "" empty)
+ $ map (\gs -> head' "export" gs)
+ $ groupBy (\g g' -> g ^. phylo_groupBranchId == g' ^. phylo_groupBranchId)
+ $ sortOn (\g -> g ^. phylo_groupBranchId) groups
+ --------------------------------------
+ groups :: [PhyloGroup]
+ groups = traceExportGroups
+ $ processDynamics
+ $ getGroupsFromLevel (phyloLevel $ getConfig phylo)
+ $ tracePhyloInfo phylo
+
+
+traceExportBranches :: [PhyloBranch] -> [PhyloBranch]
+traceExportBranches branches = trace ("\n"
+ <> "-- | Export " <> show(length branches) <> " branches") branches
+
+tracePhyloInfo :: Phylo -> Phylo
+tracePhyloInfo phylo = trace ("\n" <> "##########################" <> "\n\n" <> "-- | Phylo with β = "
+ <> show(_qua_granularity $ phyloQuality $ getConfig phylo) <> " applied to "
+ <> show(length $ Vector.toList $ getRoots phylo) <> " foundations"
+ ) phylo
+
+
+traceExportGroups :: [PhyloGroup] -> [PhyloGroup]
+traceExportGroups groups = trace ("\n" <> "-- | Export "
+ <> show(length $ nub $ map (\g -> g ^. phylo_groupBranchId) groups) <> " branches, "
+ <> show(length groups) <> " groups and "
+ <> show(length $ nub $ concat $ map (\g -> g ^. phylo_groupNgrams) groups) <> " terms"
+ ) groups
-module Gargantext.Viz.Phylo.PhyloExport where
\ No newline at end of file