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gargantext.git
2 years ago[VERSION] +1 to 0.0.5.6.5
Alexandre Delanoë [Wed, 2 Mar 2022 10:00:50 +0000 (11:00 +0100)]
[VERSION] +1 to 0.0.5.6.5

2 years agoMerge branch '111-dev-refactor-text-corpus-api-with-conduit-alp' of ssh://gitlab...
Alexandre Delanoë [Wed, 2 Mar 2022 09:09:23 +0000 (10:09 +0100)]
Merge branch '111-dev-refactor-text-corpus-api-with-conduit-alp' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

2 years ago[conduit] update commits for pubmed/hal
Przemek Kaminski [Wed, 2 Mar 2022 07:31:09 +0000 (08:31 +0100)]
[conduit] update commits for pubmed/hal

2 years ago[conduit] some refactoring
Przemek Kaminski [Wed, 2 Mar 2022 07:25:13 +0000 (08:25 +0100)]
[conduit] some refactoring

2 years ago[corpus new] add info about current doc id
Przemek Kaminski [Tue, 1 Mar 2022 07:13:04 +0000 (08:13 +0100)]
[corpus new] add info about current doc id

This is for debugging purposes for the Prelude.read error.

2 years ago[BIN] gargantext-client config for stack
Alexandre Delanoë [Mon, 28 Feb 2022 16:11:20 +0000 (17:11 +0100)]
[BIN] gargantext-client config for stack

2 years ago[VERSION] +1 to 0.0.5.6.4
Alexandre Delanoë [Mon, 28 Feb 2022 09:35:33 +0000 (10:35 +0100)]
[VERSION] +1 to 0.0.5.6.4

2 years ago[refactoring] remove Prelude.read which causes difficult to debug errors
Przemek Kaminski [Thu, 24 Feb 2022 13:28:58 +0000 (14:28 +0100)]
[refactoring] remove Prelude.read which causes difficult to debug errors

Instead use Text.Read.readMaybe and panic with custom error message.

2 years ago[conduit] implement conduit for Hal, Pubmed
Przemek Kaminski [Thu, 24 Feb 2022 06:28:48 +0000 (07:28 +0100)]
[conduit] implement conduit for Hal, Pubmed

2 years agofix some Conduit wiring, lifting IO conduit to a more generic setting
Alp Mestanogullari [Tue, 22 Feb 2022 11:31:20 +0000 (12:31 +0100)]
fix some Conduit wiring, lifting IO conduit to a more generic setting

2 years agoMerge branch 'dev' into 111-dev-refactor-text-corpus-api-with-conduit
Przemek Kaminski [Mon, 21 Feb 2022 08:52:06 +0000 (09:52 +0100)]
Merge branch 'dev' into 111-dev-refactor-text-corpus-api-with-conduit

2 years ago[text-api] first rewrite using Conduit
Przemek Kaminski [Fri, 18 Feb 2022 20:12:19 +0000 (21:12 +0100)]
[text-api] first rewrite using Conduit

NOTE This doesn't compile yet.

2 years ago[hal] use conduit for hal parsing
Przemek Kaminski [Fri, 18 Feb 2022 17:17:12 +0000 (18:17 +0100)]
[hal] use conduit for hal parsing

This still isn't optimal because in our code we use lists, so this
will fetch everything (using conduit), coerce into a list and then
process.

2 years ago[DEBUG] adding trace
Alexandre Delanoë [Fri, 18 Feb 2022 11:21:01 +0000 (12:21 +0100)]
[DEBUG] adding trace

2 years ago[DEBUG] AddDocument
Alexandre Delanoë [Fri, 18 Feb 2022 11:12:44 +0000 (12:12 +0100)]
[DEBUG] AddDocument

2 years ago[FIX] Export Phylo Ratio
Alexandre Delanoë [Thu, 17 Feb 2022 15:31:47 +0000 (16:31 +0100)]
[FIX] Export Phylo Ratio

2 years ago[Auth] add user_id to auth response
Karen Konou [Thu, 17 Feb 2022 15:30:07 +0000 (16:30 +0100)]
[Auth] add user_id to auth response

2 years ago[FIX][PHYLO] SubConfi simplification
Alexandre Delanoë [Thu, 17 Feb 2022 15:06:42 +0000 (16:06 +0100)]
[FIX][PHYLO] SubConfi simplification

2 years ago[FIX] Example Cleopatre Date hack
Alexandre Delanoë [Thu, 17 Feb 2022 14:45:24 +0000 (15:45 +0100)]
[FIX] Example Cleopatre Date hack

2 years ago[FIX] dot path
Alexandre Delanoë [Thu, 17 Feb 2022 14:24:27 +0000 (15:24 +0100)]
[FIX] dot path

2 years ago[FEAT][PHYLO] update parameters with PhyloSubConfig
Alexandre Delanoë [Tue, 15 Feb 2022 14:53:43 +0000 (15:53 +0100)]
[FEAT][PHYLO] update parameters with PhyloSubConfig

2 years ago[VERSION] +1 to 0.0.5.6.3
Alexandre Delanoë [Thu, 17 Feb 2022 08:07:55 +0000 (09:07 +0100)]
[VERSION] +1 to 0.0.5.6.3

2 years ago[FIX][EXPORT][GEXF] size of nodes were lacking
Alexandre Delanoë [Thu, 17 Feb 2022 08:07:27 +0000 (09:07 +0100)]
[FIX][EXPORT][GEXF] size of nodes were lacking

2 years ago[VERSION] +1 to 0.0.5.6.2
Alexandre Delanoë [Wed, 16 Feb 2022 13:07:58 +0000 (14:07 +0100)]
[VERSION] +1 to 0.0.5.6.2

2 years ago[VERSION] +1 to 0.0.5.6.1
Alexandre Delanoë [Tue, 15 Feb 2022 09:59:54 +0000 (10:59 +0100)]
[VERSION] +1 to 0.0.5.6.1

2 years ago[FEAT] Clustering Method Confluence backend connection
Alexandre Delanoë [Tue, 15 Feb 2022 09:58:45 +0000 (10:58 +0100)]
[FEAT] Clustering Method Confluence backend connection

2 years ago[VERSION] +1 to 0.0.5.6
Alexandre Delanoë [Mon, 14 Feb 2022 13:36:12 +0000 (14:36 +0100)]
[VERSION] +1 to 0.0.5.6

2 years ago[API] Phylo backend basic connection
Alexandre Delanoë [Mon, 14 Feb 2022 10:36:34 +0000 (11:36 +0100)]
[API] Phylo backend basic connection

2 years ago[REBASE] Dev <-> dev-phylo
Alexandre Delanoë [Mon, 14 Feb 2022 08:29:25 +0000 (09:29 +0100)]
[REBASE] Dev <-> dev-phylo

2 years ago[FEAT] Bulding phylo with graphviz
Alexandre Delanoë [Fri, 11 Feb 2022 11:23:14 +0000 (12:23 +0100)]
[FEAT] Bulding phylo with graphviz

2 years ago[FEAT] FlowPhylo implemented
Alexandre Delanoë [Fri, 11 Feb 2022 10:27:17 +0000 (11:27 +0100)]
[FEAT] FlowPhylo implemented

2 years ago[CONFIG] fixing default config (and removing spaces at end of lines)
Alexandre Delanoë [Tue, 8 Feb 2022 08:42:35 +0000 (09:42 +0100)]
[CONFIG] fixing default config (and removing spaces at end of lines)

2 years agofix
qlobbe [Thu, 20 Jan 2022 10:21:37 +0000 (11:21 +0100)]
fix

2 years agochanges done
qlobbe [Fri, 9 Jul 2021 08:13:45 +0000 (10:13 +0200)]
changes done

2 years agoadd default weight
qlobbe [Mon, 31 May 2021 14:38:09 +0000 (16:38 +0200)]
add default weight

2 years agoadd a list parser param
qlobbe [Fri, 21 May 2021 12:00:59 +0000 (14:00 +0200)]
add a list parser param

2 years ago[FEAT][PHYLO] corpusId to Documents function
Alexandre Delanoë [Mon, 7 Feb 2022 14:59:41 +0000 (15:59 +0100)]
[FEAT][PHYLO] corpusId to Documents function

2 years ago[FEAT][PHYLO] preparing integration to backend
Alexandre Delanoë [Mon, 7 Feb 2022 10:10:13 +0000 (11:10 +0100)]
[FEAT][PHYLO] preparing integration to backend

2 years agoMerge branch 'dev' into 104-dev-john-snow-nlp
Przemek Kaminski [Mon, 14 Feb 2022 06:15:47 +0000 (07:15 +0100)]
Merge branch 'dev' into 104-dev-john-snow-nlp

2 years ago[VERSION] +1 to 0.0.5.5.7
Alexandre Delanoë [Fri, 11 Feb 2022 14:42:15 +0000 (15:42 +0100)]
[VERSION] +1 to 0.0.5.5.7

2 years agoChangelog
Alexandre Delanoë [Thu, 10 Feb 2022 15:52:58 +0000 (16:52 +0100)]
Changelog

2 years ago[FIX] right version name
Alexandre Delanoë [Thu, 10 Feb 2022 15:45:51 +0000 (16:45 +0100)]
[FIX] right version name

2 years ago[VERSION] +1 to 0.0.5.5.6
Alexandre Delanoë [Thu, 10 Feb 2022 15:45:09 +0000 (16:45 +0100)]
[VERSION] +1 to 0.0.5.5.6

2 years ago[FIX] Trigger to remove
Alexandre Delanoë [Thu, 10 Feb 2022 15:44:21 +0000 (16:44 +0100)]
[FIX] Trigger to remove

2 years ago[VERSION] +1 to 0.0.5.5.5
Alexandre Delanoë [Thu, 10 Feb 2022 14:40:26 +0000 (15:40 +0100)]
[VERSION] +1 to 0.0.5.5.5

2 years ago[FRONT] changelog
Alexandre Delanoë [Thu, 10 Feb 2022 09:46:01 +0000 (10:46 +0100)]
[FRONT] changelog

2 years ago[VERSION] +1 to 0.0.5.5.4
Alexandre Delanoë [Thu, 10 Feb 2022 09:23:21 +0000 (10:23 +0100)]
[VERSION] +1 to 0.0.5.5.4

2 years agoMerge branch 'client-executable' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell...
Alexandre Delanoë [Thu, 10 Feb 2022 08:53:36 +0000 (09:53 +0100)]
Merge branch 'client-executable' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

2 years ago[OPTIM] Ngrams Table scores
Alexandre Delanoë [Thu, 10 Feb 2022 08:53:13 +0000 (09:53 +0100)]
[OPTIM] Ngrams Table scores

2 years agoAdd client executable to run 'scripts' against a running Garg backend
Alp Mestanogullari [Wed, 9 Feb 2022 16:04:54 +0000 (17:04 +0100)]
Add client executable to run 'scripts' against a running Garg backend

2 years ago[VERSION] +1 to 0.0.5.5.3
Alexandre Delanoë [Fri, 4 Feb 2022 12:58:46 +0000 (13:58 +0100)]
[VERSION] +1 to 0.0.5.5.3

2 years ago[FIX] Adding a List size for others lists
Alexandre Delanoë [Fri, 4 Feb 2022 12:57:33 +0000 (13:57 +0100)]
[FIX] Adding a List size for others lists

2 years ago[VERSION] +1 to 0.0.5.5.2
Alexandre Delanoë [Thu, 3 Feb 2022 14:53:46 +0000 (15:53 +0100)]
[VERSION] +1 to 0.0.5.5.2

2 years ago[OPTIM] Ngrams Table
Alexandre Delanoë [Thu, 3 Feb 2022 14:53:05 +0000 (15:53 +0100)]
[OPTIM] Ngrams Table

2 years ago[VERSION] +1 to 0.0.5.5.1
Alexandre Delanoë [Thu, 3 Feb 2022 06:56:06 +0000 (07:56 +0100)]
[VERSION] +1 to 0.0.5.5.1

2 years ago[FIX] Graph Search with selected node (context migration related)
Alexandre Delanoë [Thu, 3 Feb 2022 06:55:28 +0000 (07:55 +0100)]
[FIX] Graph Search with selected node (context migration related)

2 years ago[VERSION] +1 to 0.0.5.5
Alexandre Delanoë [Wed, 2 Feb 2022 14:26:37 +0000 (15:26 +0100)]
[VERSION] +1 to 0.0.5.5

2 years ago[FEAT] Nodes Scores connected (needs some tests still)
Alexandre Delanoë [Tue, 1 Feb 2022 16:42:00 +0000 (17:42 +0100)]
[FEAT] Nodes Scores connected (needs some tests still)

2 years ago[VERSION] +1 to 0.0.5.3
Alexandre Delanoë [Tue, 1 Feb 2022 13:58:02 +0000 (14:58 +0100)]
[VERSION] +1 to 0.0.5.3

2 years ago[VERSION] +1 to 0.0.5.2
Alexandre Delanoë [Mon, 31 Jan 2022 15:20:43 +0000 (16:20 +0100)]
[VERSION] +1 to 0.0.5.2

2 years ago[FIX] Scores in ngrams table
Alexandre Delanoë [Mon, 31 Jan 2022 15:19:50 +0000 (16:19 +0100)]
[FIX] Scores in ngrams table

2 years ago[john snow] add cache volume in docker-compose, fix "message" Maybe
Przemek Kaminski [Mon, 31 Jan 2022 11:08:05 +0000 (12:08 +0100)]
[john snow] add cache volume in docker-compose, fix "message" Maybe

2 years ago[john-snow] implement pos/lemma language
Przemek Kaminski [Mon, 31 Jan 2022 10:35:35 +0000 (11:35 +0100)]
[john-snow] implement pos/lemma language

2 years ago[john snow] reorder tasks
Przemek Kaminski [Fri, 28 Jan 2022 19:22:23 +0000 (20:22 +0100)]
[john snow] reorder tasks

Issue both pos and lemma tasks, then wait for both. This is a bit
better „parallelization” than: issue pos, wait for it, issue lemma,
wait for it.

2 years ago[john snow nlp] implement api for pos & lemma
Przemek Kaminski [Fri, 28 Jan 2022 18:49:31 +0000 (19:49 +0100)]
[john snow nlp] implement api for pos & lemma

2 years ago[FEAT] Scores, main backend database functions, needs API connection (WIP)
Alexandre Delanoë [Fri, 28 Jan 2022 14:45:38 +0000 (15:45 +0100)]
[FEAT] Scores, main backend database functions, needs API connection (WIP)

2 years ago[CLEAN] removing some printDebug
Alexandre Delanoë [Wed, 26 Jan 2022 12:38:06 +0000 (13:38 +0100)]
[CLEAN] removing some printDebug

2 years ago[VERSION] +1 to 0.0.5.1
Alexandre Delanoë [Wed, 26 Jan 2022 09:44:28 +0000 (10:44 +0100)]
[VERSION] +1 to 0.0.5.1

2 years ago[FIX] Indexes for database and score counts
Alexandre Delanoë [Wed, 26 Jan 2022 09:43:55 +0000 (10:43 +0100)]
[FIX] Indexes for database and score counts

2 years agoMerge remote-tracking branch 'origin/dev-104-adding-language' into 104-dev-john-snow-nlp
Przemek Kaminski [Wed, 26 Jan 2022 07:44:55 +0000 (08:44 +0100)]
Merge remote-tracking branch 'origin/dev-104-adding-language' into 104-dev-john-snow-nlp

2 years ago[ISSUE #104] adding language
Alexandre Delanoë [Wed, 26 Jan 2022 06:53:48 +0000 (07:53 +0100)]
[ISSUE #104] adding language

2 years ago[john snow nlp] add image to docker-compose file
Przemek Kaminski [Tue, 25 Jan 2022 18:30:11 +0000 (19:30 +0100)]
[john snow nlp] add image to docker-compose file

2 years ago[VERSION] +1 to 0.0.5
Alexandre Delanoë [Fri, 21 Jan 2022 13:44:07 +0000 (14:44 +0100)]
[VERSION] +1 to 0.0.5

2 years ago[MIGRATION] gargantext-upgrade can be used.
Alexandre Delanoë [Fri, 21 Jan 2022 13:41:13 +0000 (14:41 +0100)]
[MIGRATION] gargantext-upgrade can be used.

2 years ago[MIGRATION] upgrade script (WIP)
Alexandre Delanoë [Thu, 20 Jan 2022 16:04:55 +0000 (17:04 +0100)]
[MIGRATION] upgrade script (WIP)

2 years ago[MIGRATION] New schema migration SQL script
Alexandre Delanoë [Tue, 18 Jan 2022 14:56:13 +0000 (15:56 +0100)]
[MIGRATION] New schema migration SQL script

2 years ago[CLEAN] unused functions after check of Graph computation
Alexandre Delanoë [Tue, 18 Jan 2022 14:47:33 +0000 (15:47 +0100)]
[CLEAN] unused functions after check of Graph computation

2 years ago[FIX] Module renamed
Alexandre Delanoë [Mon, 17 Jan 2022 15:09:39 +0000 (16:09 +0100)]
[FIX] Module renamed

2 years ago[CLEAN]
Alexandre Delanoë [Mon, 17 Jan 2022 14:01:53 +0000 (15:01 +0100)]
[CLEAN]

2 years ago[FIX] Scores at insertion
Alexandre Delanoë [Mon, 17 Jan 2022 13:36:00 +0000 (14:36 +0100)]
[FIX] Scores at insertion

2 years ago[FIX] Counts in NgramsTable and context_node_ngrams insertion
Alexandre Delanoë [Mon, 17 Jan 2022 10:46:39 +0000 (11:46 +0100)]
[FIX] Counts in NgramsTable and context_node_ngrams insertion

2 years ago[Backup][WIP]
Alexandre Delanoë [Fri, 14 Jan 2022 17:21:47 +0000 (18:21 +0100)]
[Backup][WIP]

[*r*epoSaver*A cEtxicoen]p "rtepioosn/:no deSqlError Id{-0s-tqmlp-Srteatepo1 2=3 8"22-3150013."c,b osrq"l
E[wrixteecNSotdaetSutso r=i eFsa]t a[l(E)r]r
or, sqlErrorMsg = "une instruction insert ou update sur la table \194\171 context_node_ngrams \194\187 viole la contrainte de cl\195\169\n\195\169trang\195\168re \194\171 context_node_ngrams_context_id_fkey \194\187", sqlErrorDetail = "La cl\195\169 (context_id)=(135) n'est pas pr\195\169sente dans la table \194\171 nodes \194\187.", sqlErrorHint = ""}

2 years ago[FIX] Routes (merge with Document export)
Alexandre Delanoë [Wed, 12 Jan 2022 15:35:58 +0000 (16:35 +0100)]
[FIX] Routes (merge with Document export)

2 years ago[FIX] getContextWith
Alexandre Delanoë [Wed, 12 Jan 2022 15:26:59 +0000 (16:26 +0100)]
[FIX] getContextWith

2 years ago[BDD upgrade] adding Context route
Alexandre Delanoë [Tue, 11 Jan 2022 14:42:16 +0000 (15:42 +0100)]
[BDD upgrade] adding Context route

2 years ago[FIX] Ngrams in list
Alexandre Delanoë [Tue, 11 Jan 2022 07:41:06 +0000 (08:41 +0100)]
[FIX] Ngrams in list

2 years ago[FIX] Requests with Contexts (WIP)
Alexandre Delanoë [Mon, 10 Jan 2022 14:43:22 +0000 (15:43 +0100)]
[FIX] Requests with Contexts (WIP)

2 years ago[Chart] Fix Docs count (Chart still not completed)
Alexandre Delanoë [Sat, 8 Jan 2022 09:16:35 +0000 (10:16 +0100)]
[Chart] Fix Docs count (Chart still not completed)

2 years ago[FIX] Docs Table scores
Alexandre Delanoë [Fri, 7 Jan 2022 12:37:17 +0000 (13:37 +0100)]
[FIX] Docs Table scores

2 years ago[FIX] Search in abstrct
Alexandre Delanoë [Thu, 6 Jan 2022 12:50:43 +0000 (13:50 +0100)]
[FIX] Search in abstrct
MR: https://gitlab.iscpif.fr/gargantext/haskell-gargantext/merge_requests/53

2 years ago[FIX] ContextNodeNgrams2
Alexandre Delanoë [Thu, 6 Jan 2022 12:05:00 +0000 (13:05 +0100)]
[FIX] ContextNodeNgrams2

2 years ago[FIX] Doc Table fixed
Alexandre Delanoë [Wed, 5 Jan 2022 13:31:10 +0000 (14:31 +0100)]
[FIX] Doc Table fixed

2 years ago[WIP] backup during the vacations
Alexandre Delanoë [Mon, 20 Dec 2021 08:00:53 +0000 (09:00 +0100)]
[WIP] backup during the vacations

2 years ago[VERSION] +1 to 0.0.4.9.9.6
Alexandre Delanoë [Thu, 20 Jan 2022 16:19:29 +0000 (17:19 +0100)]
[VERSION] +1 to 0.0.4.9.9.6

2 years ago[pubmed] use new Taggy parser in pubmed
Przemek Kaminski [Thu, 20 Jan 2022 10:35:05 +0000 (11:35 +0100)]
[pubmed] use new Taggy parser in pubmed

This fixes an issue when article title contained XML (like <b> etc).

2 years ago[VERSION] +1 to 0.0.4.9.9.5
Alexandre Delanoë [Fri, 14 Jan 2022 16:07:49 +0000 (17:07 +0100)]
[VERSION] +1 to 0.0.4.9.9.5

2 years agoMerge branch 'dev' into dev-sources-chart-sort
Przemek Kaminski [Fri, 14 Jan 2022 06:50:07 +0000 (07:50 +0100)]
Merge branch 'dev' into dev-sources-chart-sort

2 years ago[VERSION] +1 to 0.0.4.9.9.4
Alexandre Delanoë [Wed, 12 Jan 2022 08:22:04 +0000 (09:22 +0100)]
[VERSION] +1 to 0.0.4.9.9.4

2 years ago[document-export] some code cleanup
Przemek Kaminski [Wed, 12 Jan 2022 07:36:26 +0000 (08:36 +0100)]
[document-export] some code cleanup

2 years ago[document-export] fix utf-8 encoding
Przemek Kaminski [Wed, 12 Jan 2022 07:32:51 +0000 (08:32 +0100)]
[document-export] fix utf-8 encoding