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gargantext.git
16 months ago[FIX]
Alexandre Delanoë [Wed, 28 Jun 2023 13:53:32 +0000 (15:53 +0200)]
[FIX]

16 months agofix the shape and the font
qlobbe [Wed, 28 Jun 2023 13:33:55 +0000 (15:33 +0200)]
fix the shape and the font

16 months agofix the shape
qlobbe [Wed, 28 Jun 2023 13:31:14 +0000 (15:31 +0200)]
fix the shape

16 months agofix the invalid chart
qlobbe [Tue, 27 Jun 2023 14:37:46 +0000 (16:37 +0200)]
fix the invalid chart

16 months ago[FIX] admin
Alexandre Delanoë [Wed, 28 Jun 2023 14:33:39 +0000 (16:33 +0200)]
[FIX] admin

16 months agoUpdate cabal-install to 3.10.1.0 via overlays
Alfredo Di Napoli [Wed, 28 Jun 2023 10:24:41 +0000 (12:24 +0200)]
Update cabal-install to 3.10.1.0 via overlays

16 months agoAdd .clippy.dhall to package.yaml, force hpack installation in update-cabal-project...
Alfredo Di Napoli [Wed, 28 Jun 2023 07:43:07 +0000 (09:43 +0200)]
Add .clippy.dhall to package.yaml, force hpack installation in update-cabal-project script

16 months ago[FIX] Cabal
Alexandre Delanoë [Tue, 27 Jun 2023 15:40:45 +0000 (17:40 +0200)]
[FIX] Cabal

16 months ago[FIX] Cabal clippy
Alexandre Delanoë [Tue, 27 Jun 2023 15:30:08 +0000 (17:30 +0200)]
[FIX] Cabal clippy

16 months agoMerge branch 'adinapoli/try-stack2cabal' into dev
Alexandre Delanoë [Tue, 27 Jun 2023 15:29:55 +0000 (17:29 +0200)]
Merge branch 'adinapoli/try-stack2cabal' into dev

16 months agoInitial version of the project that builds with cabal
Alfredo Di Napoli [Tue, 27 Jun 2023 14:27:59 +0000 (16:27 +0200)]
Initial version of the project that builds with cabal

16 months agoAlmost working version of cabal build
Alfredo Di Napoli [Tue, 27 Jun 2023 14:05:52 +0000 (16:05 +0200)]
Almost working version of cabal build

16 months agoInitial work to support building with cabal
Alfredo Di Napoli [Tue, 27 Jun 2023 09:13:07 +0000 (11:13 +0200)]
Initial work to support building with cabal

16 months ago[ERGO] Sending email at the end of phylo
Alexandre Delanoë [Tue, 27 Jun 2023 13:58:10 +0000 (15:58 +0200)]
[ERGO] Sending email at the end of phylo

16 months ago[FIX] Nix Config
Alexandre Delanoë [Tue, 27 Jun 2023 10:00:24 +0000 (12:00 +0200)]
[FIX] Nix Config

16 months ago[VERSION] +1 to 0.0.6.9.9.7
Alexandre Delanoë [Tue, 27 Jun 2023 09:06:16 +0000 (11:06 +0200)]
[VERSION] +1 to 0.0.6.9.9.7

16 months ago[FIX] Licence
Alexandre Delanoë [Tue, 27 Jun 2023 09:04:05 +0000 (11:04 +0200)]
[FIX] Licence

16 months agoMerge remote-tracking branch 'origin/dev-phylo' into dev-merge
Alexandre Delanoë [Tue, 27 Jun 2023 08:55:23 +0000 (10:55 +0200)]
Merge remote-tracking branch 'origin/dev-phylo' into dev-merge

16 months ago[FIX] Nix shell install
Alexandre Delanoë [Tue, 27 Jun 2023 08:54:37 +0000 (10:54 +0200)]
[FIX] Nix shell install

16 months agofix the synchronic clustering
qlobbe [Tue, 27 Jun 2023 07:19:52 +0000 (09:19 +0200)]
fix the synchronic clustering

16 months ago[FIX] Print phylo dev
Alexandre Delanoë [Mon, 26 Jun 2023 15:28:20 +0000 (17:28 +0200)]
[FIX] Print phylo

16 months agoresolve the conflict
qlobbe [Mon, 26 Jun 2023 14:11:42 +0000 (16:11 +0200)]
resolve the conflict

16 months ago[FIX] DefaultMode for phylo
Alexandre Delanoë [Mon, 26 Jun 2023 13:42:46 +0000 (15:42 +0200)]
[FIX] DefaultMode for phylo

16 months ago[FIX] Phylo
Alexandre Delanoë [Wed, 21 Jun 2023 13:43:40 +0000 (15:43 +0200)]
[FIX] Phylo

16 months agomaybe fix the phylo issue
qlobbe [Wed, 21 Jun 2023 12:22:17 +0000 (14:22 +0200)]
maybe fix the phylo issue

16 months ago[VERSION] +1 to 0.0.6.9.9.6.9
Alexandre Delanoë [Wed, 21 Jun 2023 08:47:43 +0000 (10:47 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.9

16 months agoMerge remote-tracking branch 'origin/506-dev-tree-search-fix' into dev
Alexandre Delanoë [Wed, 21 Jun 2023 08:46:43 +0000 (10:46 +0200)]
Merge remote-tracking branch 'origin/506-dev-tree-search-fix' into dev

16 months ago[VERSION] +1 to 0.0.6.9.9.6.8
Alexandre Delanoë [Wed, 21 Jun 2023 08:44:08 +0000 (10:44 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.8

16 months agoMerge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2
Przemysław Kaminski [Wed, 21 Jun 2023 08:27:41 +0000 (10:27 +0200)]
Merge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2

16 months ago[pubmed] implement pubmed api key in hyperdata user
Przemysław Kaminski [Wed, 21 Jun 2023 08:23:31 +0000 (10:23 +0200)]
[pubmed] implement pubmed api key in hyperdata user

16 months ago[Tree search] Search in shared folders
Karen Konou [Wed, 21 Jun 2023 08:19:43 +0000 (10:19 +0200)]
[Tree search] Search in shared folders

16 months ago[FIX] Update Node Phylo
Alexandre Delanoë [Tue, 20 Jun 2023 21:18:32 +0000 (23:18 +0200)]
[FIX] Update Node Phylo

16 months ago[node] fix pubmed JSON serialization
Przemysław Kaminski [Tue, 20 Jun 2023 15:54:18 +0000 (17:54 +0200)]
[node] fix pubmed JSON serialization

16 months agoMerge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2
Przemysław Kaminski [Tue, 20 Jun 2023 14:54:25 +0000 (16:54 +0200)]
Merge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2

16 months agoMerge remote-tracking branch 'origin/revert-0b51636b' into dev
Alexandre Delanoë [Tue, 20 Jun 2023 14:53:13 +0000 (16:53 +0200)]
Merge remote-tracking branch 'origin/revert-0b51636b' into dev

16 months ago[FIX] Phylo default mode
Alexandre Delanoë [Tue, 20 Jun 2023 14:52:59 +0000 (16:52 +0200)]
[FIX] Phylo default mode

16 months agoRevert "Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes...
Przemyslaw Kaminski [Tue, 20 Jun 2023 14:51:02 +0000 (16:51 +0200)]
Revert "Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev-merge"

This reverts merge request !166

16 months ago[errors] better handling of garg job errors
Przemysław Kaminski [Tue, 20 Jun 2023 05:43:38 +0000 (07:43 +0200)]
[errors] better handling of garg job errors

JSON should now be better so that the UI can handle it in task async
handler.

16 months ago[VERSION] +1 to 0.0.6.9.9.6.7
Alexandre Delanoë [Tue, 20 Jun 2023 13:31:06 +0000 (15:31 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.7

16 months agoMerge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev...
Alexandre Delanoë [Tue, 20 Jun 2023 13:29:16 +0000 (15:29 +0200)]
Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev-merge

16 months agoMerge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge
Alexandre Delanoë [Tue, 20 Jun 2023 13:28:52 +0000 (15:28 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge

16 months ago[MERGE] Phylo
Alexandre Delanoë [Tue, 20 Jun 2023 13:28:45 +0000 (15:28 +0200)]
[MERGE] Phylo

16 months agoAdd Phylo golden tests
Alfredo Di Napoli [Tue, 20 Jun 2023 07:31:03 +0000 (09:31 +0200)]
Add Phylo golden tests

16 months agoInitial work on the GraphData for Phylio GraphData
Alfredo Di Napoli [Mon, 19 Jun 2023 14:54:13 +0000 (16:54 +0200)]
Initial work on the GraphData for Phylio GraphData

16 months ago[errors] better handling of garg job errors
Przemysław Kaminski [Tue, 20 Jun 2023 05:43:38 +0000 (07:43 +0200)]
[errors] better handling of garg job errors

JSON should now be better so that the UI can handle it in task async
handler.

16 months ago[json] bring back previous JSON serialization of Datafield
Przemysław Kaminski [Mon, 19 Jun 2023 17:27:14 +0000 (19:27 +0200)]
[json] bring back previous JSON serialization of Datafield

16 months agoRevert b3fb1a1697d18777af6b401c132c39a5c905e129
Przemysław Kaminski [Mon, 19 Jun 2023 17:03:32 +0000 (19:03 +0200)]
Revert b3fb1a1697d18777af6b401c132c39a5c905e129

This reverts commit b3fb1a1697d18777af6b401c132c39a5c905e129

It introduced changes which cause issues described in
https://gitlab.iscpif.fr/gargantext/purescript-gargantext/issues/571

16 months agoMerge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge
Alexandre Delanoë [Mon, 19 Jun 2023 13:51:16 +0000 (15:51 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge

16 months agoPartial support for bidirectional PhyloData parsing
Alfredo Di Napoli [Mon, 19 Jun 2023 13:17:53 +0000 (15:17 +0200)]
Partial support for bidirectional PhyloData parsing

This commits changes the `PhyloData` data structure to
include a proper `GraphData` in the `pd_data` field. The
`GraphData` is almost complete, but the `objects` field needs
to be further refined from a generic JSON `Value` to proper
Haskell types.

16 months agoMerge remote-tracking branch 'origin/adinapoli/fix-datafield-instance' into dev-merge
Alexandre Delanoë [Mon, 19 Jun 2023 11:41:50 +0000 (13:41 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-datafield-instance' into dev-merge

16 months agoAdd JSON roundtrip tests for Datafield and WithQuery
Alfredo Di Napoli [Mon, 19 Jun 2023 09:29:05 +0000 (11:29 +0200)]
Add JSON roundtrip tests for Datafield and WithQuery

16 months ago[VERSION] +1 to 0.0.6.9.9.6.6
Alexandre Delanoë [Mon, 19 Jun 2023 08:16:28 +0000 (10:16 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.6

16 months ago[FIX] Phylo is back
Alexandre Delanoë [Mon, 19 Jun 2023 08:14:56 +0000 (10:14 +0200)]
[FIX] Phylo is back

16 months agoRevert "Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key...
Alexandre Delanoë [Mon, 19 Jun 2023 07:42:53 +0000 (09:42 +0200)]
Revert "Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev""

This reverts commit a444cb3000bbc36c1328d7d7788257a557d0abc8.

16 months agoRevert "Try the hotfix"
Alexandre Delanoë [Mon, 19 Jun 2023 07:42:45 +0000 (09:42 +0200)]
Revert "Try the hotfix"

This reverts commit 22b14f561106ded3520b5b4672d169491f1d4beb.

16 months ago[MERGE] Phylo
Alexandre Delanoë [Sun, 18 Jun 2023 20:00:48 +0000 (22:00 +0200)]
[MERGE] Phylo

16 months agoTry the hotfix
Alfredo Di Napoli [Fri, 16 Jun 2023 14:41:57 +0000 (16:41 +0200)]
Try the hotfix

16 months agoRevert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev"
Alfredo Di Napoli [Fri, 16 Jun 2023 13:57:13 +0000 (15:57 +0200)]
Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev"

This reverts commit d04cf03b00ed6c8ba8bd685044b897e4df701eee, reversing
changes made to e213a4bfe8a4be983f4a9be2f6a62308e6b27d6f.

16 months agoadaptative time fixed
qlobbe [Thu, 15 Jun 2023 14:39:38 +0000 (16:39 +0200)]
adaptative time fixed

16 months ago[VERSION] +1 to 0.0.6.9.9.6.5
Alexandre Delanoë [Thu, 15 Jun 2023 09:36:49 +0000 (11:36 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.5

16 months ago[FIX] Order 2
Alexandre Delanoë [Thu, 15 Jun 2023 09:31:39 +0000 (11:31 +0200)]
[FIX] Order 2

16 months ago[FIX/FEAT] Order 2 improvement
Alexandre Delanoë [Wed, 7 Jun 2023 07:11:23 +0000 (09:11 +0200)]
[FIX/FEAT] Order 2 improvement

16 months ago[VERSION] +1 to 0.0.6.9.9.6.4
Alexandre Delanoë [Wed, 14 Jun 2023 15:39:49 +0000 (17:39 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.4

16 months ago[DOC] Renaming
Alexandre Delanoë [Wed, 14 Jun 2023 15:34:10 +0000 (17:34 +0200)]
[DOC] Renaming

16 months ago[FIX] SQL
Alexandre Delanoë [Wed, 14 Jun 2023 15:31:04 +0000 (17:31 +0200)]
[FIX] SQL

16 months agoMerge branch 'dev' into 551-dev-graphql-contexts-ngrams
Przemysław Kaminski [Tue, 13 Jun 2023 15:56:44 +0000 (17:56 +0200)]
Merge branch 'dev' into 551-dev-graphql-contexts-ngrams

16 months ago[ngrams] use saveNodeStoryImmediate, fix ordering with insertNgrams
Przemysław Kaminski [Tue, 13 Jun 2023 09:20:51 +0000 (11:20 +0200)]
[ngrams] use saveNodeStoryImmediate, fix ordering with insertNgrams

16 months ago[ngrams] small refactorings
Przemysław Kaminski [Tue, 13 Jun 2023 09:20:41 +0000 (11:20 +0200)]
[ngrams] small refactorings

16 months agoadaptative time scale with phylo 1click
qlobbe [Mon, 12 Jun 2023 11:38:17 +0000 (13:38 +0200)]
adaptative time scale with phylo 1click

16 months ago[VERSION] +1 to 0.0.6.9.9.6.3
Alexandre Delanoë [Mon, 12 Jun 2023 08:37:16 +0000 (10:37 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.3

16 months agoMerge remote-tracking branch 'origin/adinapoli/issue-182' into dev-merge
Alexandre Delanoë [Mon, 12 Jun 2023 08:15:40 +0000 (10:15 +0200)]
Merge remote-tracking branch 'origin/adinapoli/issue-182' into dev-merge

16 months agoAdd opt-in integration tests for Arxiv and PubMed
Alfredo Di Napoli [Mon, 12 Jun 2023 07:29:03 +0000 (09:29 +0200)]
Add opt-in integration tests for Arxiv and PubMed

16 months agoWIP - start porting Pubmed queries
Alfredo Di Napoli [Mon, 5 Jun 2023 12:47:20 +0000 (14:47 +0200)]
WIP - start porting Pubmed queries

16 months agoAdd Arxiv tests
Alfredo Di Napoli [Tue, 30 May 2023 07:40:18 +0000 (09:40 +0200)]
Add Arxiv tests

This commit adds a bunch of Arxiv tests to demonstrate we can
successfully transform our `Query` type into the Arxiv AST.

16 months agoImplement conversion from Query to Arxiv
Alfredo Di Napoli [Mon, 29 May 2023 11:52:16 +0000 (13:52 +0200)]
Implement conversion from Query to Arxiv

16 months agoAdd more Bool Query Engine tests
Alfredo Di Napoli [Mon, 29 May 2023 09:25:35 +0000 (11:25 +0200)]
Add more Bool Query Engine tests

16 months agoMove tests under a single umbrella (tasty)
Alfredo Di Napoli [Mon, 29 May 2023 08:15:25 +0000 (10:15 +0200)]
Move tests under a single umbrella (tasty)

16 months agoPrepare for corpusQuery tests
Alfredo Di Napoli [Mon, 29 May 2023 07:51:13 +0000 (09:51 +0200)]
Prepare for corpusQuery tests

16 months agoWIP - Add Gargantext.Core.Text.Corpus.Query
Alfredo Di Napoli [Mon, 22 May 2023 14:13:42 +0000 (16:13 +0200)]
WIP - Add Gargantext.Core.Text.Corpus.Query

It's not fully wired in, `convertQuery` for Arxiv is implemented as
`undefined`.

16 months agoSimplify ExternalAPIs type
Alfredo Di Napoli [Mon, 22 May 2023 13:18:30 +0000 (15:18 +0200)]
Simplify ExternalAPIs type

This commit simplifies the `ExternalAPIs` type, which is now a pure
enumeration, moving the lookup of the Pubmed key at the usage sites.
This simplified the code quite a bit, and made some otherwise-effectful
functions pure.

16 months agocorpus/parsers: add gitlab issue parser
Christian Merten [Sun, 11 Jun 2023 17:20:13 +0000 (19:20 +0200)]
corpus/parsers: add gitlab issue parser

16 months agoMerge remote-tracking branch 'origin/551-dev-graphql-contexts-ngrams' into dev-merge
Alexandre Delanoë [Fri, 9 Jun 2023 12:12:19 +0000 (14:12 +0200)]
Merge remote-tracking branch 'origin/551-dev-graphql-contexts-ngrams' into dev-merge

16 months ago[DOC] Database Schema SVG file. Thank you Seeg for having generated it with Wolfram
Alexandre Delanoë [Fri, 9 Jun 2023 07:26:03 +0000 (09:26 +0200)]
[DOC] Database Schema SVG file. Thank you Seeg for having generated it with Wolfram

16 months ago[VERSION] +1 to 0.0.6.9.9.6.2
Alexandre Delanoë [Thu, 8 Jun 2023 18:51:35 +0000 (20:51 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.2

16 months ago[RENAME] NodeFrames renamed
Alexandre Delanoë [Thu, 8 Jun 2023 18:44:04 +0000 (20:44 +0200)]
[RENAME] NodeFrames renamed

16 months agomissing file
Alexandre Delanoë [Thu, 8 Jun 2023 15:00:48 +0000 (17:00 +0200)]
missing file

16 months agoMerge remote-tracking branch 'origin/adinapoli/issue-217' into dev
Alexandre Delanoë [Thu, 8 Jun 2023 12:17:30 +0000 (14:17 +0200)]
Merge remote-tracking branch 'origin/adinapoli/issue-217' into dev

16 months ago[VERSION] +1 to 0.0.6.9.9.6.1
Alexandre Delanoë [Wed, 7 Jun 2023 20:24:24 +0000 (22:24 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.1

16 months agoMerge remote-tracking branch 'origin/551-dev-graphql-contexts-ngrams' into dev-merge
Alexandre Delanoë [Wed, 7 Jun 2023 20:02:54 +0000 (22:02 +0200)]
Merge remote-tracking branch 'origin/551-dev-graphql-contexts-ngrams' into dev-merge

16 months ago[TOOLING] using Clippy and renaming function to export book
Alexandre Delanoë [Wed, 7 Jun 2023 17:18:33 +0000 (19:18 +0200)]
[TOOLING] using Clippy and renaming function to export book

16 months ago[graphql ngrams] more permissive context ngrams matching fts
Przemysław Kaminski [Wed, 7 Jun 2023 09:54:57 +0000 (11:54 +0200)]
[graphql ngrams] more permissive context ngrams matching fts

16 months ago[docker] pgadmin volume to persist settings when upgrading
Przemysław Kaminski [Wed, 7 Jun 2023 08:17:05 +0000 (10:17 +0200)]
[docker] pgadmin volume to persist settings when upgrading

16 months ago[ngrams] remove materialized view, some refactorings
Przemysław Kaminski [Tue, 6 Jun 2023 19:26:26 +0000 (21:26 +0200)]
[ngrams] remove materialized view, some refactorings

16 months agoApply ListType replacement on children as well (fixes #217)
Alfredo Di Napoli [Mon, 5 Jun 2023 09:44:51 +0000 (11:44 +0200)]
Apply ListType replacement on children as well (fixes #217)

16 months agoRemove type alias ReParent
Alfredo Di Napoli [Mon, 5 Jun 2023 08:36:24 +0000 (10:36 +0200)]
Remove type alias ReParent

It doesn't add anything over just `State NgramsTableMap ()`, if not
obscuring what the single functions should actually be doing.

16 months agoAdd patches-map to garg-test deps
Alfredo Di Napoli [Mon, 5 Jun 2023 06:36:38 +0000 (08:36 +0200)]
Add patches-map to garg-test deps

16 months agoAdd test case to reproduce #217
Alfredo Di Napoli [Fri, 2 Jun 2023 09:00:50 +0000 (11:00 +0200)]
Add test case to reproduce #217

16 months ago[VERSION] +1 to 0.0.6.9.9.6
Alexandre Delanoë [Mon, 5 Jun 2023 08:46:53 +0000 (10:46 +0200)]
[VERSION] +1 to 0.0.6.9.9.6

16 months ago[FIX] removing cron jobs
Alexandre Delanoë [Mon, 5 Jun 2023 08:12:14 +0000 (10:12 +0200)]
[FIX] removing cron jobs

16 months ago[VERSION] +1 to 0.0.6.9.9.5.8
Alexandre Delanoë [Mon, 5 Jun 2023 07:42:50 +0000 (09:42 +0200)]
[VERSION] +1 to 0.0.6.9.9.5.8