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gargantext.git
19 months agoUse lapack instead of liblapack as nonHs dep in nix
Alfredo Di Napoli [Mon, 20 Mar 2023 12:00:31 +0000 (13:00 +0100)]
Use lapack instead of liblapack as nonHs dep in nix

19 months agoUse igraph 0.10.4
Alfredo Di Napoli [Mon, 20 Mar 2023 08:08:34 +0000 (09:08 +0100)]
Use igraph 0.10.4

19 months ago[VERSION] +1 to 0.0.6.9.7.5
Alexandre Delanoë [Fri, 17 Mar 2023 10:25:51 +0000 (11:25 +0100)]
[VERSION] +1 to 0.0.6.9.7.5

20 months ago[VERSION] +1 to 0.0.6.9.7.4
Alexandre Delanoë [Tue, 14 Mar 2023 14:54:56 +0000 (15:54 +0100)]
[VERSION] +1 to 0.0.6.9.7.4

20 months ago[CLEAN] version script in main repo
Alexandre Delanoë [Tue, 14 Mar 2023 12:41:53 +0000 (13:41 +0100)]
[CLEAN] version script in main repo

20 months ago[VERSION] +1 to 0.0.6.9.7.3
Alexandre Delanoë [Tue, 14 Mar 2023 08:41:49 +0000 (09:41 +0100)]
[VERSION] +1 to 0.0.6.9.7.3

20 months ago[VERSION] +1 to 0.0.6.9.7.2
Alexandre Delanoë [Mon, 13 Mar 2023 10:56:57 +0000 (11:56 +0100)]
[VERSION] +1 to 0.0.6.9.7.2

20 months ago[VERSION] +1 to 0.0.6.9.7.1
Alexandre Delanoë [Fri, 10 Mar 2023 21:49:07 +0000 (22:49 +0100)]
[VERSION] +1 to 0.0.6.9.7.1

20 months ago[MERGE]
Alexandre Delanoë [Fri, 10 Mar 2023 21:48:03 +0000 (22:48 +0100)]
[MERGE]

20 months ago1 click phylo v1 is ok
qlobbe [Fri, 3 Mar 2023 10:14:09 +0000 (11:14 +0100)]
1 click phylo v1 is ok

20 months agonew strategy for choosing temporal matching candidates
qlobbe [Tue, 10 Jan 2023 17:53:05 +0000 (18:53 +0100)]
new strategy for choosing temporal matching candidates

20 months agorefactoring
qlobbe [Tue, 29 Nov 2022 13:03:22 +0000 (14:03 +0100)]
refactoring

20 months agorefactoring temporal matching
qlobbe [Fri, 30 Sep 2022 08:45:07 +0000 (10:45 +0200)]
refactoring temporal matching

20 months agomerge with dev
qlobbe [Fri, 10 Mar 2023 18:20:15 +0000 (19:20 +0100)]
merge with dev

20 months ago[VERSION] +1 to 0.0.6.9.7
Alexandre Delanoë [Fri, 10 Mar 2023 13:20:52 +0000 (14:20 +0100)]
[VERSION] +1 to 0.0.6.9.7

20 months agoMerge remote-tracking branch 'origin/dev-177-DoorWelcome' into dev
Alexandre Delanoë [Fri, 10 Mar 2023 09:10:40 +0000 (10:10 +0100)]
Merge remote-tracking branch 'origin/dev-177-DoorWelcome' into dev

20 months agoadding a note
Fabien Manière [Fri, 10 Mar 2023 08:43:30 +0000 (09:43 +0100)]
adding a note

20 months agoMerge branch 'dev-phylo' into dev
Alexandre Delanoë [Thu, 9 Mar 2023 16:32:21 +0000 (17:32 +0100)]
Merge branch 'dev-phylo' into dev

20 months agoMerge branch 'dev-phylo' of https://gitlab.iscpif.fr/gargantext/haskell-gargantext...
qlobbe [Thu, 9 Mar 2023 09:04:03 +0000 (10:04 +0100)]
Merge branch 'dev-phylo' of https://gitlab.iscpif.fr/gargantext/haskell-gargantext into dev-phylo

20 months ago[FEAT] Graph O2 bridgeness improvement and FrameWrite Extraction
Alexandre Delanoë [Wed, 8 Mar 2023 06:44:43 +0000 (07:44 +0100)]
[FEAT] Graph O2 bridgeness improvement and FrameWrite Extraction

20 months ago[VERSION] +1 to 0.0.6.9.6
Alexandre Delanoë [Tue, 7 Mar 2023 09:55:36 +0000 (10:55 +0100)]
[VERSION] +1 to 0.0.6.9.6

20 months ago[MERGE]
Alexandre Delanoë [Mon, 6 Mar 2023 17:16:01 +0000 (18:16 +0100)]
[MERGE]

20 months ago[MERGE]
Alexandre Delanoë [Mon, 6 Mar 2023 17:13:49 +0000 (18:13 +0100)]
[MERGE]

20 months ago[VERSION] +1 to 0.0.6.9.5
Alexandre Delanoë [Fri, 3 Mar 2023 12:36:30 +0000 (13:36 +0100)]
[VERSION] +1 to 0.0.6.9.5

20 months ago[FIX] removing debug prints
Alexandre Delanoë [Fri, 3 Mar 2023 12:35:36 +0000 (13:35 +0100)]
[FIX] removing debug prints

20 months ago1 click phylo v1 is ok
qlobbe [Fri, 3 Mar 2023 10:14:09 +0000 (11:14 +0100)]
1 click phylo v1 is ok

20 months ago[VERSION] +1 to 0.0.6.9.4.9
Alexandre Delanoë [Thu, 2 Mar 2023 14:41:43 +0000 (15:41 +0100)]
[VERSION] +1 to 0.0.6.9.4.9

20 months ago[ADM] cabal update
Alexandre Delanoë [Thu, 2 Mar 2023 14:40:45 +0000 (15:40 +0100)]
[ADM] cabal update

20 months agoMerge remote-tracking branch 'origin/475-dev-node-team-invite' into dev-merge
Alexandre Delanoë [Thu, 2 Mar 2023 14:35:10 +0000 (15:35 +0100)]
Merge remote-tracking branch 'origin/475-dev-node-team-invite' into dev-merge

20 months ago[FIX] Clustering improvement
Alexandre Delanoë [Thu, 2 Mar 2023 10:24:43 +0000 (11:24 +0100)]
[FIX] Clustering improvement

20 months ago[MERGE]
Alexandre Delanoë [Thu, 2 Mar 2023 10:13:56 +0000 (11:13 +0100)]
[MERGE]

20 months ago[VERSION] +1 to 0.0.6.9.4.8
Alexandre Delanoë [Thu, 2 Mar 2023 08:22:45 +0000 (09:22 +0100)]
[VERSION] +1 to 0.0.6.9.4.8

20 months ago[MERGE]
Alexandre Delanoë [Thu, 2 Mar 2023 07:59:07 +0000 (08:59 +0100)]
[MERGE]

20 months ago[VERSION] +1 to 0.0.6.9.4.7
Alexandre Delanoë [Wed, 1 Mar 2023 16:18:50 +0000 (17:18 +0100)]
[VERSION] +1 to 0.0.6.9.4.7

20 months ago[FEAT] Clustering with more granularity and structure
Alexandre Delanoë [Wed, 1 Mar 2023 16:17:22 +0000 (17:17 +0100)]
[FEAT] Clustering with more granularity and structure

20 months ago[DOC] ChangeLog
Alexandre Delanoë [Tue, 28 Feb 2023 14:23:12 +0000 (15:23 +0100)]
[DOC] ChangeLog

20 months agoMerge remote-tracking branch 'origin/dev-177-DoorWelcome-v2' into dev
Alexandre Delanoë [Tue, 28 Feb 2023 14:22:11 +0000 (15:22 +0100)]
Merge remote-tracking branch 'origin/dev-177-DoorWelcome-v2' into dev

20 months ago[FIX] Order 2 regression and split of clustering
Alexandre Delanoë [Tue, 28 Feb 2023 14:21:57 +0000 (15:21 +0100)]
[FIX] Order 2 regression and split of clustering

20 months ago[API] Team members API for autocomplete
Karen Konou [Tue, 28 Feb 2023 13:02:33 +0000 (14:02 +0100)]
[API] Team members API for autocomplete

20 months agoMerge branch 'dev' into 475-dev-node-team-invite
Karen Konou [Tue, 28 Feb 2023 09:13:12 +0000 (10:13 +0100)]
Merge branch 'dev' into 475-dev-node-team-invite

20 months agocurious h2...
Fabien Manière [Mon, 27 Feb 2023 15:16:21 +0000 (16:16 +0100)]
curious h2...

20 months agoadd sentence about frontend
Fabien Manière [Mon, 27 Feb 2023 15:13:00 +0000 (16:13 +0100)]
add sentence about frontend

20 months ago[VERSION] +1 to 0.0.6.9.4.6
Alexandre Delanoë [Mon, 27 Feb 2023 15:05:38 +0000 (16:05 +0100)]
[VERSION] +1 to 0.0.6.9.4.6

20 months agoMerge remote-tracking branch 'origin/dev-177-DoorWelcome-v2' into dev
Alexandre Delanoë [Mon, 27 Feb 2023 12:53:11 +0000 (13:53 +0100)]
Merge remote-tracking branch 'origin/dev-177-DoorWelcome-v2' into dev

20 months agoadding start script and complete readme
Fabien Manière [Sat, 25 Feb 2023 12:18:06 +0000 (13:18 +0100)]
adding start script and complete readme

20 months agoreadme structure
Fabien Manière [Wed, 22 Feb 2023 08:26:10 +0000 (09:26 +0100)]
readme structure

20 months agoSwitch to hsparql-0.3.8
Alfredo Di Napoli [Mon, 20 Feb 2023 07:38:20 +0000 (08:38 +0100)]
Switch to hsparql-0.3.8

20 months agoSwitch to Hackage-released version of HSvm
Alfredo Di Napoli [Thu, 16 Feb 2023 08:21:43 +0000 (09:21 +0100)]
Switch to Hackage-released version of HSvm

This commit switches to an Hackage-released version of HSvm,
specifically 0.1.1.3.22, which is the same we were previously
relying on, but by pinning on a specific commit
`3fe28b683aba5ddf05e3b5f8eced0bd05c5a29f9` of the GitHub repo.

This also restores commit `243cfbb5e9e979611e55d97b2d0414587757a455`,
which got misteriously missing.

20 months ago[VERSION] +1 to 0.0.6.9.4.5
Alexandre Delanoë [Thu, 16 Feb 2023 14:52:11 +0000 (15:52 +0100)]
[VERSION] +1 to 0.0.6.9.4.5

20 months ago[FIX] Clean unused dependencies
Alexandre Delanoë [Thu, 16 Feb 2023 14:50:21 +0000 (15:50 +0100)]
[FIX] Clean unused dependencies

20 months agoMerge remote-tracking branch 'origin/adinapoli/drop-servant-static-th' into dev
Alexandre Delanoë [Thu, 16 Feb 2023 14:35:11 +0000 (15:35 +0100)]
Merge remote-tracking branch 'origin/adinapoli/drop-servant-static-th' into dev

20 months ago[FIX] Crawler Arxiv Api
Alexandre Delanoë [Thu, 16 Feb 2023 14:35:00 +0000 (15:35 +0100)]
[FIX] Crawler Arxiv Api

20 months agoMerge remote-tracking branch 'origin/adinapoli/issue-180-deps-audit' into dev
Alexandre Delanoë [Thu, 16 Feb 2023 14:33:39 +0000 (15:33 +0100)]
Merge remote-tracking branch 'origin/adinapoli/issue-180-deps-audit' into dev

20 months agoDrop unused servant-static-th
Alfredo Di Napoli [Thu, 16 Feb 2023 07:50:38 +0000 (08:50 +0100)]
Drop unused servant-static-th

This commit removes the `servant-static-th` dependency from the project,
because it turns out we weren't using this package, and furthemore we
were depending on a fork of the latter.

20 months agoSwitch to Hackage version of hstatistics
Alfredo Di Napoli [Thu, 16 Feb 2023 07:34:41 +0000 (08:34 +0100)]
Switch to Hackage version of hstatistics

We were depending on Alexandre's fork of `hstatistics`, but in the
meantime his changes got merged upstream and the maintainer release
version `0.3.1` on Hackage, so this commit changes the `stack.yaml` file
to use that.

20 months ago[DOC] README
Alexandre Delanoë [Wed, 15 Feb 2023 14:27:23 +0000 (15:27 +0100)]
[DOC] README

20 months agoMerge remote-tracking branch 'origin/dev-177-DoorWelcome' into dev
Alexandre Delanoë [Wed, 15 Feb 2023 13:38:22 +0000 (14:38 +0100)]
Merge remote-tracking branch 'origin/dev-177-DoorWelcome' into dev

20 months agoWIP: readme
Fabien Manière [Wed, 15 Feb 2023 13:33:11 +0000 (14:33 +0100)]
WIP: readme

21 months ago[DOC]
Alexandre Delanoë [Mon, 13 Feb 2023 15:59:01 +0000 (16:59 +0100)]
[DOC]

21 months agoMerge remote-tracking branch 'origin/adinapoli/issue-180-deps-audit' into dev
Alexandre Delanoë [Mon, 13 Feb 2023 15:57:29 +0000 (16:57 +0100)]
Merge remote-tracking branch 'origin/adinapoli/issue-180-deps-audit' into dev

21 months ago[DOC] ChangeLog
Alexandre Delanoë [Mon, 13 Feb 2023 15:37:18 +0000 (16:37 +0100)]
[DOC] ChangeLog

21 months ago[VERSION] +1 to 0.0.6.9.4.4
Alexandre Delanoë [Mon, 13 Feb 2023 15:31:51 +0000 (16:31 +0100)]
[VERSION] +1 to 0.0.6.9.4.4

21 months ago[STACK] crawler pubmed fixes
Alexandre Delanoë [Mon, 13 Feb 2023 15:19:32 +0000 (16:19 +0100)]
[STACK] crawler pubmed fixes

21 months agoDrop unused monad-logger-aeson dependency
Alfredo Di Napoli [Mon, 13 Feb 2023 14:33:17 +0000 (15:33 +0100)]
Drop unused monad-logger-aeson dependency

21 months agoAdd script to track Haskell deps
Alfredo Di Napoli [Mon, 13 Feb 2023 09:54:19 +0000 (10:54 +0100)]
Add script to track Haskell deps

21 months ago[FIX] Opaleye Query
Alexandre Delanoë [Mon, 13 Feb 2023 10:12:57 +0000 (11:12 +0100)]
[FIX] Opaleye Query

21 months agoRestore tests
Alfredo Di Napoli [Mon, 13 Feb 2023 09:37:27 +0000 (10:37 +0100)]
Restore tests

21 months agoAdd support for weeder
Alfredo Di Napoli [Mon, 13 Feb 2023 08:42:17 +0000 (09:42 +0100)]
Add support for weeder

21 months agoAdd optional Accelerate dependency on Darwin for pkgs.nix
Alfredo Di Napoli [Sun, 5 Feb 2023 12:44:10 +0000 (13:44 +0100)]
Add optional Accelerate dependency on Darwin for pkgs.nix

On Mac, building `gargantext` requires linking against the
Accelerate framework (completely unrelated to the `accelerate` Haskell
package!). This patch provides an extra `pkgs.nix` directive that will
kick in only when building on Darwin.

21 months ago[opaleye] remove ReadNull type instances
Przemysław Kaminski [Fri, 10 Feb 2023 08:34:17 +0000 (09:34 +0100)]
[opaleye] remove ReadNull type instances

They are changed to MaybeFields ...Read instead when joining.

21 months ago[VERSION] +1 to 0.0.6.9.4.3
Alexandre Delanoë [Thu, 9 Feb 2023 15:59:00 +0000 (16:59 +0100)]
[VERSION] +1 to 0.0.6.9.4.3

21 months agoMerge remote-tracking branch 'origin/175-dev-doc-table-count' into dev-merge
Alexandre Delanoë [Thu, 9 Feb 2023 14:38:41 +0000 (15:38 +0100)]
Merge remote-tracking branch 'origin/175-dev-doc-table-count' into dev-merge

21 months ago[refactor] upgrade opaleye to 0.9.6.1
Przemysław Kaminski [Thu, 9 Feb 2023 11:18:36 +0000 (12:18 +0100)]
[refactor] upgrade opaleye to 0.9.6.1

Remove joins, use optionalRestrict instead.

Also, remove cabal.project because stack.yaml and package.yaml cover
dependencies already.

21 months agoreadme
fabien [Thu, 9 Feb 2023 11:04:41 +0000 (12:04 +0100)]
readme

21 months agoUpdate README.md
Fabien Maniere [Tue, 7 Feb 2023 14:50:31 +0000 (15:50 +0100)]
Update README.md

21 months ago[VERSION] +1 to 0.0.6.9.4.2
Alexandre Delanoë [Fri, 3 Feb 2023 13:28:26 +0000 (14:28 +0100)]
[VERSION] +1 to 0.0.6.9.4.2

21 months ago[VERSION] +1 to 0.0.6.9.4.1
Alexandre Delanoë [Wed, 1 Feb 2023 14:29:03 +0000 (15:29 +0100)]
[VERSION] +1 to 0.0.6.9.4.1

21 months ago[DEBUG] Message
Alexandre Delanoë [Wed, 1 Feb 2023 14:23:29 +0000 (15:23 +0100)]
[DEBUG] Message

21 months ago[FIX] WOS Parser
Alexandre Delanoë [Tue, 31 Jan 2023 14:21:17 +0000 (15:21 +0100)]
[FIX] WOS Parser

21 months ago[DOC]
Alexandre Delanoë [Mon, 30 Jan 2023 14:30:54 +0000 (15:30 +0100)]
[DOC]

21 months ago[MERGE]
Alexandre Delanoë [Mon, 30 Jan 2023 14:09:59 +0000 (15:09 +0100)]
[MERGE]

21 months ago[DOC]
Alexandre Delanoë [Mon, 30 Jan 2023 10:47:14 +0000 (11:47 +0100)]
[DOC]

21 months ago[FIX] #173 Ngrams Change insert causes Database error
Alexandre Delanoë [Mon, 30 Jan 2023 10:46:49 +0000 (11:46 +0100)]
[FIX] #173 Ngrams Change insert causes Database error

21 months ago[VERSION] +1 to 0.0.6.9.4
Alexandre Delanoë [Mon, 30 Jan 2023 10:05:38 +0000 (11:05 +0100)]
[VERSION] +1 to 0.0.6.9.4

21 months ago[FIX] BUG email/username uniforming to Lower case
Alexandre Delanoë [Mon, 30 Jan 2023 09:59:57 +0000 (10:59 +0100)]
[FIX] BUG email/username uniforming to Lower case

21 months ago[Node Write Analysis] Change types
Karen Konou [Sun, 29 Jan 2023 11:17:09 +0000 (12:17 +0100)]
[Node Write Analysis] Change types

21 months agoMerge branch 'dev' into 164-dev-node-write-analysis
Karen Konou [Sun, 29 Jan 2023 11:15:43 +0000 (12:15 +0100)]
Merge branch 'dev' into 164-dev-node-write-analysis

21 months ago[WIP] How to graph my writings ?
Alexandre Delanoë [Fri, 27 Jan 2023 15:54:03 +0000 (16:54 +0100)]
[WIP] How to graph my writings ?

21 months ago[VERSION] +1 to 0.0.6.9.3
Alexandre Delanoë [Thu, 26 Jan 2023 13:59:58 +0000 (14:59 +0100)]
[VERSION] +1 to 0.0.6.9.3

21 months agoMerge remote-tracking branch 'origin/dev-hackathon-fixes' into dev-merge
Alexandre Delanoë [Thu, 26 Jan 2023 13:45:34 +0000 (14:45 +0100)]
Merge remote-tracking branch 'origin/dev-hackathon-fixes' into dev-merge

21 months ago[FEAT] Improving NodeWriteParsing
Alexandre Delanoë [Wed, 25 Jan 2023 13:35:44 +0000 (14:35 +0100)]
[FEAT] Improving NodeWriteParsing

21 months ago[refactoring] add StrictData option, refactor Data.Map to Strict
Przemysław Kaminski [Wed, 25 Jan 2023 13:19:26 +0000 (14:19 +0100)]
[refactoring] add StrictData option, refactor Data.Map to Strict

Based on the suggestions in
https://kodimensional.dev/space-leak

21 months ago[graphql] fixes to the ngrams context endpoint
Przemysław Kaminski [Wed, 25 Jan 2023 13:16:13 +0000 (14:16 +0100)]
[graphql] fixes to the ngrams context endpoint

21 months ago[DOC]
Alexandre Delanoë [Tue, 24 Jan 2023 14:57:22 +0000 (15:57 +0100)]
[DOC]

21 months ago[FIX] NodeWrites parsing first fix
Alexandre Delanoë [Tue, 24 Jan 2023 14:56:52 +0000 (15:56 +0100)]
[FIX] NodeWrites parsing first fix

21 months ago[nodestory] fix INSERT function so that it is performed only...
Przemysław Kaminski [Mon, 23 Jan 2023 14:49:52 +0000 (15:49 +0100)]
[nodestory] fix INSERT function so that it is performed only...

...when node_id exists in the DB

Warning: this silently avoids insertion of patches when node_id is
missing for some reason in the history.

21 months agoMerge branch 'dev' into dev-hackathon-fixes
Przemysław Kaminski [Mon, 23 Jan 2023 13:22:24 +0000 (14:22 +0100)]
Merge branch 'dev' into dev-hackathon-fixes

21 months ago[graph] some refactoring of Core.Viz.Graph
Przemysław Kaminski [Mon, 23 Jan 2023 09:08:00 +0000 (10:08 +0100)]
[graph] some refactoring of Core.Viz.Graph

21 months ago[DOC]
Alexandre Delanoë [Mon, 23 Jan 2023 08:24:05 +0000 (09:24 +0100)]
[DOC]

21 months ago[READ] Code clean
Alexandre Delanoë [Fri, 20 Jan 2023 21:26:45 +0000 (22:26 +0100)]
[READ] Code clean