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gargantext.git
3 years ago[REFACT]
Alexandre Delanoë [Thu, 15 Jul 2021 16:36:15 +0000 (18:36 +0200)]
[REFACT]

3 years agomake gargantext buildable with stack & cabal in a nix environment
Alp Mestanogullari [Tue, 22 Jun 2021 12:20:58 +0000 (14:20 +0200)]
make gargantext buildable with stack & cabal in a nix environment

I revamped the whole Nix infrastructure a bit to clearly delineate the bits
about providing a suitable environment (with respect to non Haskell deps) and
the shell and stack helper expressions, and moved it all under `nix/` to
make it easier to ignore (if not interested) or focus on (if interested) the Nix
infrastructure of this repository.

For some reason, this required changes that don't seem necessary in the
Docker environment, even though this all happens using the same GHC version
as used in the Docker environment/Stackage LTS snapshot.

The said changes correspond to the source repositories mentioned in the
cabal.project and stack.yaml files that have not been left untouched, for which
I either pointed to a fork I made, or a different commit that I pushed in a
dedicated branch (for the ISCPIF gitlab repositories to which I seemingly
have write access).

Many of the changes were about Haddock `-- |` style syntax being used in an
unexpected place, and this was making GHC's parser quite sad.

This commit doesn't (yet?) provide Nix infrastructure for building everything
in/through Nix, but shouldn't be too much work with something like haskell.nix,
which has suitable tooling to import stack.yaml or cabal.project based
project specifications and turn them into fully nixified builds, which might
or might not be desirable.

3 years ago[FIX] Docker repo version
Alexandre Delanoë [Mon, 21 Jun 2021 11:48:38 +0000 (13:48 +0200)]
[FIX] Docker repo version

3 years ago[FEAT] Adding Visio micro-service (Jitsi)
Alexandre Delanoë [Wed, 16 Jun 2021 14:09:32 +0000 (16:09 +0200)]
[FEAT] Adding Visio micro-service (Jitsi)

First add New type NodeFrameVisio it this case:
modified :         src/Gargantext/Database/Admin/Types/Node.hs
After this step, just follow the compiler errors to fix the instances.

modified :         src/Gargantext/Prelude/Config.hs

The NodeType NodeFrameVisio is created in Database and need some
parameters:
modified :         src/Gargantext/Database/Action/Node.hs
modified :         src/Gargantext/Database/Admin/Config.hs
modified :         src/Gargantext/Database/Admin/Types/Hyperdata/Default.hs

Finally:
modified :         gargantext.ini_toModify
The url of the micro-service can be adapted in gargantext.ini

3 years ago[FIX] Candiate List Size
Alexandre Delanoë [Fri, 4 Jun 2021 13:13:07 +0000 (15:13 +0200)]
[FIX] Candiate List Size

3 years ago[FIX] lists size
Alexandre Delanoë [Wed, 2 Jun 2021 09:48:35 +0000 (11:48 +0200)]
[FIX] lists size

3 years agoMerge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Wed, 2 Jun 2021 07:37:28 +0000 (09:37 +0200)]
Merge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

3 years ago[FIX] candidate size
Alexandre Delanoë [Wed, 2 Jun 2021 07:37:16 +0000 (09:37 +0200)]
[FIX] candidate size

3 years ago[FIX] doc
Alexandre Delanoë [Tue, 1 Jun 2021 14:36:20 +0000 (16:36 +0200)]
[FIX] doc

3 years agoMinor for CI test
Alexandre Delanoë [Tue, 1 Jun 2021 13:07:03 +0000 (15:07 +0200)]
Minor for CI test

3 years ago[FIX] test WIP
Alexandre Delanoë [Tue, 1 Jun 2021 13:05:35 +0000 (15:05 +0200)]
[FIX] test WIP

3 years ago[FIX] names
Alexandre Delanoë [Tue, 1 Jun 2021 13:02:54 +0000 (15:02 +0200)]
[FIX] names

3 years ago[FIX] Tests: module name
Alexandre Delanoë [Tue, 1 Jun 2021 12:45:53 +0000 (14:45 +0200)]
[FIX] Tests: module name

3 years agosmall commit to exec CI runner
Alexandre Delanoë [Tue, 1 Jun 2021 12:00:55 +0000 (14:00 +0200)]
small commit to exec CI runner

3 years agoMerge branch 'dev-test' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Tue, 1 Jun 2021 11:46:22 +0000 (13:46 +0200)]
Merge branch 'dev-test' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

3 years ago[CLEAN] Commenting debug funs
Alexandre Delanoë [Tue, 1 Jun 2021 11:37:37 +0000 (13:37 +0200)]
[CLEAN] Commenting debug funs

3 years ago[test] move some files into test
Przemek Kaminski [Tue, 1 Jun 2021 11:06:01 +0000 (13:06 +0200)]
[test] move some files into test

They don't seem to be needed in code

3 years agoMerge branch 'dev' into dev-test
Przemek Kaminski [Tue, 1 Jun 2021 09:52:17 +0000 (11:52 +0200)]
Merge branch 'dev' into dev-test

3 years ago[TESTS] adding quick test for partition
Alexandre Delanoë [Mon, 31 May 2021 15:27:28 +0000 (17:27 +0200)]
[TESTS] adding quick test for partition

3 years ago[FIX] create dir if not exist
Alexandre Delanoë [Mon, 31 May 2021 13:41:17 +0000 (15:41 +0200)]
[FIX] create dir if not exist

3 years ago[CI] add cache key (commented for now)
Przemek Kaminski [Mon, 31 May 2021 07:47:31 +0000 (09:47 +0200)]
[CI] add cache key (commented for now)

3 years ago[CI] remove cache key, as this results in constant rebuilding
Przemek Kaminski [Mon, 31 May 2021 07:06:02 +0000 (09:06 +0200)]
[CI] remove cache key, as this results in constant rebuilding

3 years ago[CI] send doc artifacts only
Przemek Kaminski [Mon, 31 May 2021 06:46:32 +0000 (08:46 +0200)]
[CI] send doc artifacts only

3 years agoMerge branch 'dev' into dev-test
Przemek Kaminski [Mon, 31 May 2021 05:31:00 +0000 (07:31 +0200)]
Merge branch 'dev' into dev-test

3 years ago[FIX] cluster on connected components only and leaves others nodes alone (todo)....
Alexandre Delanoë [Fri, 28 May 2021 08:18:56 +0000 (10:18 +0200)]
[FIX] cluster on connected components only and leaves others nodes alone (todo). Use Order1 by default

3 years ago[test] fix stack command for path
Przemek Kaminski [Fri, 28 May 2021 07:21:15 +0000 (09:21 +0200)]
[test] fix stack command for path

3 years ago[test] fixes to artifacts
Przemek Kaminski [Fri, 28 May 2021 06:16:31 +0000 (08:16 +0200)]
[test] fixes to artifacts

3 years ago[test] stack local install root path as artifact output
Przemek Kaminski [Fri, 28 May 2021 06:15:16 +0000 (08:15 +0200)]
[test] stack local install root path as artifact output

3 years ago[test] CI cache dir, test stage added
Przemek Kaminski [Fri, 28 May 2021 06:06:03 +0000 (08:06 +0200)]
[test] CI cache dir, test stage added

3 years ago[test] gitlab ci docker image fix
Przemek Kaminski [Fri, 28 May 2021 05:02:02 +0000 (07:02 +0200)]
[test] gitlab ci docker image fix

3 years ago[test] fix for gitlab image
Przemek Kaminski [Fri, 28 May 2021 04:43:49 +0000 (06:43 +0200)]
[test] fix for gitlab image

3 years ago[test] fix for gitlab build (no docker)
Przemek Kaminski [Fri, 28 May 2021 04:21:32 +0000 (06:21 +0200)]
[test] fix for gitlab build (no docker)

3 years ago[test] dad gitlab-ci
Przemek Kaminski [Fri, 28 May 2021 04:03:52 +0000 (06:03 +0200)]
[test] dad gitlab-ci

3 years ago[haddock] haddock builds correclty now
Przemek Kaminski [Fri, 28 May 2021 04:03:37 +0000 (06:03 +0200)]
[haddock] haddock builds correclty now

3 years agoMerge branch 'dev' into dev-test
Przemek Kaminski [Thu, 27 May 2021 13:33:50 +0000 (15:33 +0200)]
Merge branch 'dev' into dev-test

3 years ago[graph] add debug info for graph, no partition error
Przemek Kaminski [Thu, 27 May 2021 13:08:54 +0000 (15:08 +0200)]
[graph] add debug info for graph, no partition error

3 years ago[LIST] improved for candidates
Alexandre Delanoë [Wed, 26 May 2021 13:10:03 +0000 (15:10 +0200)]
[LIST] improved for candidates

3 years ago[Lists] fix candidates list
Alexandre Delanoë [Wed, 26 May 2021 10:15:34 +0000 (12:15 +0200)]
[Lists] fix candidates list

3 years ago[FIX] quick fix to enable WOS parser
Alexandre Delanoë [Tue, 25 May 2021 12:04:01 +0000 (14:04 +0200)]
[FIX] quick fix to enable WOS parser

3 years ago[test] fix tests
Przemek Kaminski [Mon, 24 May 2021 16:21:29 +0000 (18:21 +0200)]
[test] fix tests

3 years ago[VERSION] +1 to 0.0.2.9.5
Alexandre Delanoë [Thu, 20 May 2021 07:51:23 +0000 (09:51 +0200)]
[VERSION] +1 to 0.0.2.9.5

3 years ago[ADMIN] Code of conduct copied from legacy GarganText repo
Alexandre Delanoë [Wed, 5 May 2021 05:37:36 +0000 (07:37 +0200)]
[ADMIN] Code of conduct copied from legacy GarganText repo

3 years ago[FIX] removing stopwords with 0 occurrences
Alexandre Delanoë [Tue, 4 May 2021 12:27:56 +0000 (14:27 +0200)]
[FIX] removing stopwords with 0 occurrences

3 years ago[FIX] multi-term reindex
Alexandre Delanoë [Tue, 4 May 2021 11:32:20 +0000 (13:32 +0200)]
[FIX] multi-term reindex

3 years ago[FIX] merge with dev-phylo
Alexandre Delanoë [Tue, 4 May 2021 07:13:19 +0000 (09:13 +0200)]
[FIX] merge with dev-phylo

3 years agoMerge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Mon, 3 May 2021 15:08:38 +0000 (17:08 +0200)]
Merge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

3 years ago[VERSION] +1 to 0.0.2.9.4
Alexandre Delanoë [Mon, 3 May 2021 15:08:29 +0000 (17:08 +0200)]
[VERSION] +1 to 0.0.2.9.4

3 years ago[FIX] removing printDebug
Alexandre Delanoë [Mon, 3 May 2021 15:07:10 +0000 (17:07 +0200)]
[FIX] removing printDebug

3 years ago[FIX] map list size filtered (others terms do not appear any more)
Alexandre Delanoë [Mon, 3 May 2021 14:22:23 +0000 (16:22 +0200)]
[FIX] map list size filtered (others terms do not appear any more)

3 years agoMerge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Mon, 3 May 2021 12:51:18 +0000 (14:51 +0200)]
Merge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

3 years ago[FIX] postgres install
Alexandre Delanoë [Mon, 3 May 2021 12:51:02 +0000 (14:51 +0200)]
[FIX] postgres install

3 years ago[FIX] doc ngrams insertion (WIP)
Alexandre Delanoë [Fri, 30 Apr 2021 14:18:26 +0000 (16:18 +0200)]
[FIX] doc ngrams insertion (WIP)

3 years ago[FEAT] reindexing enabled in frontend
Alexandre Delanoë [Fri, 30 Apr 2021 05:36:22 +0000 (07:36 +0200)]
[FEAT] reindexing enabled in frontend

3 years ago[FIX] testing (WIP)
Alexandre Delanoë [Thu, 29 Apr 2021 15:15:23 +0000 (17:15 +0200)]
[FIX] testing (WIP)

3 years ago[FEAT] Indexation function to test
Alexandre Delanoë [Thu, 29 Apr 2021 14:14:49 +0000 (16:14 +0200)]
[FEAT] Indexation function to test

3 years ago[INDEXING] WIP
Alexandre Delanoë [Wed, 28 Apr 2021 16:26:37 +0000 (18:26 +0200)]
[INDEXING] WIP

3 years ago[VERSION] +1 to 0.0.2.9.3
Alexandre Delanoë [Wed, 28 Apr 2021 07:00:05 +0000 (09:00 +0200)]
[VERSION] +1 to 0.0.2.9.3

3 years ago[FIX] cabal package config
Alexandre Delanoë [Tue, 27 Apr 2021 15:53:07 +0000 (17:53 +0200)]
[FIX] cabal package config

3 years ago[FIX] warnings
Alexandre Delanoë [Tue, 27 Apr 2021 15:41:19 +0000 (17:41 +0200)]
[FIX] warnings

3 years ago[CLEAN] creating Prelude.GargDB file
Alexandre Delanoë [Tue, 27 Apr 2021 07:48:43 +0000 (09:48 +0200)]
[CLEAN] creating Prelude.GargDB file

3 years ago[FIX] Data.List needs to be qualified for future GHC upgrade
Alexandre Delanoë [Tue, 27 Apr 2021 07:39:39 +0000 (09:39 +0200)]
[FIX] Data.List needs to be qualified for future GHC upgrade

3 years ago[CLEAN] split Prelude.Utils
Alexandre Delanoë [Tue, 27 Apr 2021 07:39:12 +0000 (09:39 +0200)]
[CLEAN] split Prelude.Utils

3 years ago[CLEAN] Prelude.Utils clock measures
Alexandre Delanoë [Tue, 27 Apr 2021 07:27:46 +0000 (09:27 +0200)]
[CLEAN] Prelude.Utils clock measures

3 years ago[TYPE] semantics, renaming
Alexandre Delanoë [Tue, 27 Apr 2021 06:54:21 +0000 (08:54 +0200)]
[TYPE] semantics, renaming

3 years ago[UPDATE] docker script
Alexandre Delanoë [Tue, 27 Apr 2021 06:29:40 +0000 (08:29 +0200)]
[UPDATE] docker script

3 years ago[BIN] run script
Alexandre Delanoë [Mon, 26 Apr 2021 15:46:28 +0000 (17:46 +0200)]
[BIN] run script

3 years ago[ADMIN] LTS stack upgrade
Alexandre Delanoë [Mon, 26 Apr 2021 14:11:59 +0000 (16:11 +0200)]
[ADMIN] LTS stack upgrade

3 years ago[FIX] merge fix suite
Alexandre Delanoë [Mon, 26 Apr 2021 08:47:29 +0000 (10:47 +0200)]
[FIX] merge fix suite

3 years ago[FIX] merge dev-phylo
Alexandre Delanoë [Mon, 26 Apr 2021 08:46:46 +0000 (10:46 +0200)]
[FIX] merge dev-phylo

3 years agoadd source and fixe date
qlobbe [Fri, 23 Apr 2021 13:00:51 +0000 (15:00 +0200)]
add source and fixe date

3 years agomerge done
qlobbe [Fri, 16 Apr 2021 13:03:16 +0000 (15:03 +0200)]
merge done

3 years agoadd weighted csv
qlobbe [Mon, 12 Apr 2021 13:28:57 +0000 (15:28 +0200)]
add weighted csv

3 years ago[CLEAN/API] removing unused route
Alexandre Delanoë [Wed, 7 Apr 2021 12:32:54 +0000 (14:32 +0200)]
[CLEAN/API] removing unused route

3 years ago[TOOLS] some scripts
Alexandre Delanoë [Wed, 7 Apr 2021 07:18:46 +0000 (09:18 +0200)]
[TOOLS] some scripts

3 years ago[FEAT] adding docker file
Alexandre Delanoë [Wed, 7 Apr 2021 07:14:37 +0000 (09:14 +0200)]
[FEAT] adding docker file

3 years ago[FIX] install
Alexandre Delanoë [Tue, 6 Apr 2021 14:37:31 +0000 (16:37 +0200)]
[FIX] install

3 years ago[VERSION] +1 to 0.0.2.9.2
Alexandre Delanoë [Tue, 6 Apr 2021 13:02:03 +0000 (15:02 +0200)]
[VERSION] +1 to 0.0.2.9.2

3 years ago[FIX] removing cLouvain c++ lib
Alexandre Delanoë [Tue, 6 Apr 2021 13:01:32 +0000 (15:01 +0200)]
[FIX] removing cLouvain c++ lib

3 years ago[CLEAN] install scripts
Alexandre Delanoë [Tue, 6 Apr 2021 12:33:27 +0000 (14:33 +0200)]
[CLEAN] install scripts

3 years ago[VERSION] +1 to 0.0.2.9.1
Alexandre Delanoë [Fri, 2 Apr 2021 14:48:20 +0000 (16:48 +0200)]
[VERSION] +1 to 0.0.2.9.1

3 years ago[FIX] should not break the server
Alexandre Delanoë [Fri, 2 Apr 2021 14:13:58 +0000 (16:13 +0200)]
[FIX] should not break the server

3 years ago[FEAT] toTermList function
Alexandre Delanoë [Thu, 1 Apr 2021 15:13:43 +0000 (17:13 +0200)]
[FEAT] toTermList function

3 years ago[VERSION] +1 to 0.0.2.9
Alexandre Delanoë [Wed, 31 Mar 2021 13:03:20 +0000 (15:03 +0200)]
[VERSION] +1 to 0.0.2.9

3 years ago[FEAT] Order 1 and 2 implemented.
Alexandre Delanoë [Tue, 30 Mar 2021 09:29:48 +0000 (11:29 +0200)]
[FEAT] Order 1 and 2 implemented.

3 years ago[FIX] clustering, order 2 similarity, ok
Alexandre Delanoë [Mon, 29 Mar 2021 15:58:16 +0000 (17:58 +0200)]
[FIX] clustering, order 2 similarity, ok

3 years ago[FEAT] Distributional Measure Similarity in Graph Flow (WIP)
Alexandre Delanoë [Fri, 26 Mar 2021 10:55:57 +0000 (11:55 +0100)]
[FEAT] Distributional Measure Similarity in Graph Flow (WIP)

3 years agofix package and cabal
qlobbe [Fri, 26 Mar 2021 09:36:59 +0000 (10:36 +0100)]
fix package and cabal

3 years agosave a phylo with cliques
qlobbe [Thu, 25 Mar 2021 15:34:33 +0000 (16:34 +0100)]
save a phylo with cliques

3 years agomerge with dev
qlobbe [Wed, 24 Mar 2021 15:10:01 +0000 (16:10 +0100)]
merge with dev

3 years agogit add step files
qlobbe [Wed, 24 Mar 2021 12:11:11 +0000 (13:11 +0100)]
git add step files

3 years agoMerge branch 'dev' into dev-small-fixes
Przemek Kaminski [Tue, 23 Mar 2021 06:23:31 +0000 (07:23 +0100)]
Merge branch 'dev' into dev-small-fixes

3 years ago[refactoring] small fixes for imports, garg ini
Przemek Kaminski [Tue, 23 Mar 2021 06:15:12 +0000 (07:15 +0100)]
[refactoring] small fixes for imports, garg ini

3 years ago[VERSION] +1 to 0.0.2.8
Alexandre Delanoë [Mon, 22 Mar 2021 18:23:33 +0000 (19:23 +0100)]
[VERSION] +1 to 0.0.2.8

3 years ago[FEAT] new clustering algo by default (Spinglass)
Alexandre Delanoë [Mon, 22 Mar 2021 18:23:13 +0000 (19:23 +0100)]
[FEAT] new clustering algo by default (Spinglass)

3 years agoadd label to sha
qlobbe [Mon, 22 Mar 2021 16:22:45 +0000 (17:22 +0100)]
add label to sha

3 years agoMerge branch 'dev-distributional' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell...
Alexandre Delanoë [Mon, 22 Mar 2021 13:12:25 +0000 (14:12 +0100)]
Merge branch 'dev-distributional' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

3 years ago[FEAT] Implements log distributional function with accelerate (#50).
Guillaume Chérel [Mon, 22 Mar 2021 11:16:40 +0000 (12:16 +0100)]
[FEAT] Implements log distributional function with accelerate (#50).

3 years ago[FIX] warning
Alexandre Delanoë [Thu, 18 Mar 2021 16:07:20 +0000 (17:07 +0100)]
[FIX] warning

3 years ago[FEAT] IGraph partitions complement
Alexandre Delanoë [Thu, 18 Mar 2021 15:53:57 +0000 (16:53 +0100)]
[FEAT] IGraph partitions complement

3 years agofirst commit
qlobbe [Thu, 18 Mar 2021 15:02:16 +0000 (16:02 +0100)]
first commit