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gargantext.git
4 years ago[ADMIN] Dep for Debian
Alexandre Delanoë [Sat, 18 Apr 2020 05:01:05 +0000 (07:01 +0200)]
[ADMIN] Dep for Debian

4 years ago[API] enabling add with form and add list again.
Alexandre Delanoë [Fri, 17 Apr 2020 08:05:51 +0000 (10:05 +0200)]
[API] enabling add with form and add list again.

4 years ago[API Query] connection with front ok
Alexandre Delanoë [Fri, 17 Apr 2020 07:55:07 +0000 (09:55 +0200)]
[API Query] connection with front ok

4 years ago[API Query] api connection ok, needs RootId fix
Alexandre Delanoë [Thu, 16 Apr 2020 16:29:07 +0000 (18:29 +0200)]
[API Query] api connection ok, needs RootId fix

4 years ago[API|Query] WIP need to fit query with frontend
Alexandre Delanoë [Wed, 15 Apr 2020 17:00:32 +0000 (19:00 +0200)]
[API|Query] WIP need to fit query with frontend

4 years agoBump version to 0.0.1.3.2
Alexandre Delanoë [Wed, 15 Apr 2020 07:36:25 +0000 (09:36 +0200)]
Bump version to 0.0.1.3.2

4 years ago[API] Facto and mkdir Admin
Alexandre Delanoë [Wed, 15 Apr 2020 07:13:15 +0000 (09:13 +0200)]
[API] Facto and mkdir Admin

4 years ago[Clean] before factoring
Alexandre Delanoë [Tue, 14 Apr 2020 20:08:31 +0000 (22:08 +0200)]
[Clean] before factoring

4 years ago[DB|Query] clean Root funs
Alexandre Delanoë [Mon, 13 Apr 2020 13:47:50 +0000 (15:47 +0200)]
[DB|Query] clean Root funs

4 years ago[DB|FACT|WIP] fix all imports and warnings. ready for tests
Alexandre Delanoë [Mon, 13 Apr 2020 10:56:24 +0000 (12:56 +0200)]
[DB|FACT|WIP] fix all imports and warnings. ready for tests

4 years ago[DB|WIP] fix Tree RootId
Alexandre Delanoë [Mon, 13 Apr 2020 08:57:22 +0000 (10:57 +0200)]
[DB|WIP] fix Tree RootId

4 years ago[DB|WIP] fixing imports still.
Alexandre Delanoë [Mon, 13 Apr 2020 08:50:09 +0000 (10:50 +0200)]
[DB|WIP] fixing imports still.

4 years ago[DB|WIP] fix imports and cycles
Alexandre Delanoë [Mon, 13 Apr 2020 06:17:37 +0000 (08:17 +0200)]
[DB|WIP] fix imports and cycles

4 years ago[WIP][REFACT] imports fixed
Alexandre Delanoë [Sun, 12 Apr 2020 08:35:35 +0000 (10:35 +0200)]
[WIP][REFACT] imports fixed

4 years ago[FACTO/WIP] files org and import fix in Database/*
Alexandre Delanoë [Sun, 12 Apr 2020 05:58:40 +0000 (07:58 +0200)]
[FACTO/WIP] files org and import fix in Database/*

4 years ago[ADM] doc for gargantext.ini
Alexandre Delanoë [Sat, 11 Apr 2020 20:03:50 +0000 (22:03 +0200)]
[ADM] doc for gargantext.ini

4 years ago[ADM] ini file fixed
Alexandre Delanoë [Sat, 11 Apr 2020 19:57:19 +0000 (21:57 +0200)]
[ADM] ini file fixed

4 years ago[GIT] ignoring *sql
Alexandre Delanoë [Sat, 11 Apr 2020 06:08:08 +0000 (08:08 +0200)]
[GIT] ignoring *sql

4 years ago[FIX] Missing files
Alexandre Delanoë [Sat, 11 Apr 2020 06:07:46 +0000 (08:07 +0200)]
[FIX] Missing files

4 years ago[WIP/DB] Refactoring (start).
Alexandre Delanoë [Sat, 11 Apr 2020 06:06:13 +0000 (08:06 +0200)]
[WIP/DB] Refactoring (start).

4 years ago[WIP] Starting query Garg for a Hello Word.
Alexandre Delanoë [Fri, 10 Apr 2020 16:21:37 +0000 (18:21 +0200)]
[WIP] Starting query Garg for a Hello Word.

4 years ago[Flow] with userId own Tree : OK mergeable.
Alexandre Delanoë [Thu, 9 Apr 2020 14:08:23 +0000 (16:08 +0200)]
[Flow] with userId own Tree : OK mergeable.

4 years ago[Flow] using user id. TODO : tests.
Alexandre Delanoë [Thu, 9 Apr 2020 13:36:50 +0000 (15:36 +0200)]
[Flow] using user id. TODO : tests.

4 years ago[Graph] clean
Alexandre Delanoë [Tue, 7 Apr 2020 13:38:55 +0000 (15:38 +0200)]
[Graph] clean

4 years agoMerge branch 'dev' into dev-graph-explorer-gexf
Przemek Kaminski [Tue, 7 Apr 2020 05:37:17 +0000 (07:37 +0200)]
Merge branch 'dev' into dev-graph-explorer-gexf

4 years ago[Graph] back to cLouvain c++ for tests/demo
Alexandre Delanoë [Mon, 6 Apr 2020 21:00:31 +0000 (23:00 +0200)]
[Graph] back to cLouvain c++ for tests/demo

4 years agoRemove inMVar and inMVarIO
Nicolas Pouillard [Mon, 6 Apr 2020 20:09:28 +0000 (22:09 +0200)]
Remove inMVar and inMVarIO

4 years agoMonadBase replaces MonadIO
Nicolas Pouillard [Mon, 6 Apr 2020 20:08:39 +0000 (22:08 +0200)]
MonadBase replaces MonadIO

4 years agoWIP connection pool
Nicolas Pouillard [Mon, 6 Apr 2020 14:59:58 +0000 (16:59 +0200)]
WIP connection pool

4 years ago[FIX] newPool
Alexandre Delanoë [Mon, 6 Apr 2020 14:45:22 +0000 (16:45 +0200)]
[FIX] newPool

4 years agoMerge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Mon, 6 Apr 2020 14:36:25 +0000 (16:36 +0200)]
Merge branch 'dev' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

4 years agoWIP connection pool
Nicolas Pouillard [Mon, 6 Apr 2020 14:36:12 +0000 (16:36 +0200)]
WIP connection pool

4 years ago[DB] gargPool
Alexandre Delanoë [Mon, 6 Apr 2020 14:35:22 +0000 (16:35 +0200)]
[DB] gargPool

4 years ago[API] Add corpus username/uid.
Alexandre Delanoë [Mon, 6 Apr 2020 13:56:54 +0000 (15:56 +0200)]
[API] Add corpus username/uid.

4 years ago[Async] Corpus New addToCorpusWithForm
Alexandre Delanoë [Mon, 6 Apr 2020 13:02:05 +0000 (15:02 +0200)]
[Async] Corpus New addToCorpusWithForm

4 years ago[Jobs] Instances Show ScraperStatus
Alexandre Delanoë [Mon, 6 Apr 2020 12:45:22 +0000 (14:45 +0200)]
[Jobs] Instances Show ScraperStatus

4 years agowhere->let
Nicolas Pouillard [Mon, 6 Apr 2020 12:39:28 +0000 (14:39 +0200)]
where->let

4 years agoDebug info in addCorpusWithForm
Nicolas Pouillard [Mon, 6 Apr 2020 12:26:44 +0000 (14:26 +0200)]
Debug info in addCorpusWithForm

4 years ago[ASYNC] for tests
Alexandre Delanoë [Mon, 6 Apr 2020 12:21:35 +0000 (14:21 +0200)]
[ASYNC] for tests

4 years ago[Async] back (corpus input test) but still needs work.
Alexandre Delanoë [Sat, 4 Apr 2020 10:57:28 +0000 (12:57 +0200)]
[Async] back (corpus input test) but still needs work.

4 years agoMerge branch 'dev-graph-async' into dev
Alexandre Delanoë [Sat, 4 Apr 2020 05:48:21 +0000 (07:48 +0200)]
Merge branch 'dev-graph-async' into dev

4 years agoMerge branch 'patch-1' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Fri, 3 Apr 2020 16:11:20 +0000 (18:11 +0200)]
Merge branch 'patch-1' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-patch

4 years ago[graph] graph versoin refresh endpoint
Przemek Kaminski [Fri, 3 Apr 2020 14:47:49 +0000 (16:47 +0200)]
[graph] graph versoin refresh endpoint

4 years agoCorrect possible typo
Mael NICOLAS [Thu, 2 Apr 2020 08:16:53 +0000 (10:16 +0200)]
Correct possible typo

4 years ago[Graph] more graph async work
Przemek Kaminski [Thu, 2 Apr 2020 06:35:31 +0000 (08:35 +0200)]
[Graph] more graph async work

4 years ago[Graph] getGraph doesn't recompute new graph version
Przemek Kaminski [Thu, 2 Apr 2020 05:15:02 +0000 (07:15 +0200)]
[Graph] getGraph doesn't recompute new graph version

Instead, I added a 'recomputeGraph' function to call it via servant
job. getGraph computes new graph only when it doesn't exist.

4 years ago[Graph] Haskell version removing the c++ one (tech+legal issue mainly).
Alexandre Delanoë [Wed, 1 Apr 2020 06:17:53 +0000 (08:17 +0200)]
[Graph] Haskell version removing the c++ one (tech+legal issue mainly).

4 years ago[GRAPH] Async Route
Alexandre Delanoë [Wed, 1 Apr 2020 06:06:56 +0000 (08:06 +0200)]
[GRAPH] Async Route

4 years agolists endpoint should accept JSON
justinwoo [Fri, 20 Mar 2020 09:35:41 +0000 (11:35 +0200)]
lists endpoint should accept JSON

4 years ago[FIX] Garg Version api.
Alexandre Delanoë [Thu, 19 Mar 2020 13:10:11 +0000 (14:10 +0100)]
[FIX] Garg Version api.

4 years agoMerge branch 'dev-version' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargant...
Alexandre Delanoë [Thu, 19 Mar 2020 09:28:25 +0000 (10:28 +0100)]
Merge branch 'dev-version' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years agoMerge branch 'update-build-shell-nix-merge' of ssh://gitlab.iscpif.fr:20022/gargantex...
Alexandre Delanoë [Thu, 19 Mar 2020 09:26:10 +0000 (10:26 +0100)]
Merge branch 'update-build-shell-nix-merge' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years ago[Optims]
Alexandre Delanoë [Thu, 19 Mar 2020 09:25:06 +0000 (10:25 +0100)]
[Optims]

4 years ago[version] add version info
Przemek Kaminski [Wed, 18 Mar 2020 09:20:57 +0000 (10:20 +0100)]
[version] add version info

NOTE: API doesn't compile yet.

4 years agoMerge branch 'update-build-shell.nix' of ssh://gitlab.iscpif.fr:20022/gargantext...
Przemek Kaminski [Wed, 18 Mar 2020 06:00:31 +0000 (07:00 +0100)]
Merge branch 'update-build-shell.nix' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into update-build-shell.nix

4 years agoupdate shell.nix nixpkgs
justinwoo [Tue, 3 Mar 2020 19:20:31 +0000 (21:20 +0200)]
update shell.nix nixpkgs

4 years agoupdate build-shell.nix and add gfortran as extra-libraries
justinwoo [Mon, 2 Mar 2020 17:26:12 +0000 (19:26 +0200)]
update build-shell.nix and add gfortran as extra-libraries

this makes `stack build --nix` work without extra system dependencies

4 years ago[graph] add gexf API endpoint
Przemek Kaminski [Fri, 13 Mar 2020 12:17:03 +0000 (13:17 +0100)]
[graph] add gexf API endpoint

4 years ago[Graph] add gexf exporter to graph endpoint
Przemek Kaminski [Fri, 13 Mar 2020 11:43:33 +0000 (12:43 +0100)]
[Graph] add gexf exporter to graph endpoint

4 years ago[docker] update image, add README info
Przemek Kaminski [Fri, 13 Mar 2020 05:50:07 +0000 (06:50 +0100)]
[docker] update image, add README info

4 years ago[OPTIM] MVar for Graph Clustering.
Alexandre Delanoë [Fri, 6 Mar 2020 14:02:05 +0000 (15:02 +0100)]
[OPTIM] MVar for Graph Clustering.

4 years ago[DOC] comments
Alexandre Delanoë [Thu, 5 Mar 2020 15:57:21 +0000 (16:57 +0100)]
[DOC] comments

4 years ago[FEAT] post list now set new list as list (and remove previous one).
Alexandre Delanoë [Thu, 5 Mar 2020 15:54:43 +0000 (16:54 +0100)]
[FEAT] post list now set new list as list (and remove previous one).

4 years ago[FEAT] NgramsList upload
Alexandre Delanoë [Thu, 5 Mar 2020 14:38:00 +0000 (15:38 +0100)]
[FEAT] NgramsList upload

4 years ago[FIX] Lists route.
Alexandre Delanoë [Wed, 4 Mar 2020 17:00:05 +0000 (18:00 +0100)]
[FIX] Lists route.

4 years agoMerge branch 'dev-file-name' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-garga...
Alexandre Delanoë [Wed, 4 Mar 2020 15:36:29 +0000 (16:36 +0100)]
Merge branch 'dev-file-name' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

4 years ago[API] file name added to corpus new endpoint
Przemek Kaminski [Wed, 4 Mar 2020 15:18:43 +0000 (16:18 +0100)]
[API] file name added to corpus new endpoint

4 years agoMerge branch 'dev-list-downloadable-with-content-type' into dev
Alexandre Delanoë [Wed, 4 Mar 2020 12:28:36 +0000 (13:28 +0100)]
Merge branch 'dev-list-downloadable-with-content-type' into dev

4 years ago[FIX] cosmetics name
Alexandre Delanoë [Wed, 4 Mar 2020 12:28:28 +0000 (13:28 +0100)]
[FIX] cosmetics name

4 years ago[List] filename for content-disposition
Przemek Kaminski [Wed, 4 Mar 2020 10:06:31 +0000 (11:06 +0100)]
[List] filename for content-disposition

4 years ago[FIX] addHeader - String -> Text
Alexandre Delanoë [Wed, 4 Mar 2020 09:27:42 +0000 (10:27 +0100)]
[FIX] addHeader - String -> Text

4 years ago[List] fix Content-Disposition
Przemek Kaminski [Wed, 4 Mar 2020 09:20:33 +0000 (10:20 +0100)]
[List] fix Content-Disposition

4 years ago[List] add Content-Type header info to list download
Przemek Kaminski [Wed, 4 Mar 2020 09:19:46 +0000 (10:19 +0100)]
[List] add Content-Type header info to list download

Unfortunately, this doesn't compile.

4 years ago[API] disable xsrf for cookie GET requests
Przemek Kaminski [Wed, 4 Mar 2020 09:16:21 +0000 (10:16 +0100)]
[API] disable xsrf for cookie GET requests

Also, list API works now.  Only the file isn't downloaded yet.

4 years agoMerge branch 'dev' into update-build-shell.nix
Przemek Kaminski [Wed, 4 Mar 2020 06:02:59 +0000 (07:02 +0100)]
Merge branch 'dev' into update-build-shell.nix

4 years agoupdate shell.nix nixpkgs
justinwoo [Tue, 3 Mar 2020 19:20:31 +0000 (21:20 +0200)]
update shell.nix nixpkgs

4 years agoupdate build-shell.nix and add gfortran as extra-libraries
justinwoo [Mon, 2 Mar 2020 17:26:12 +0000 (19:26 +0200)]
update build-shell.nix and add gfortran as extra-libraries

this makes `stack build --nix` work without extra system dependencies

4 years ago[FIX] SQL read only
Alexandre Delanoë [Tue, 3 Mar 2020 11:08:12 +0000 (12:08 +0100)]
[FIX] SQL read only

4 years ago[list] add HTML list get endpoint
Przemek Kaminski [Tue, 3 Mar 2020 11:02:18 +0000 (12:02 +0100)]
[list] add HTML list get endpoint

4 years ago[OPTIM] concurrent threads (fix mem leaks)
Alexandre Delanoë [Mon, 2 Mar 2020 14:25:53 +0000 (15:25 +0100)]
[OPTIM] concurrent threads (fix mem leaks)

4 years ago[FIX] Graph concurrency.
Alexandre Delanoë [Mon, 2 Mar 2020 11:29:50 +0000 (12:29 +0100)]
[FIX] Graph concurrency.

4 years agopin nixpkgs and prepare shell.nix
justinwoo [Mon, 2 Mar 2020 08:17:28 +0000 (10:17 +0200)]
pin nixpkgs and prepare shell.nix

4 years ago[API] get / put NgramsList (todo: tests)
Alexandre Delanoë [Fri, 28 Feb 2020 10:38:49 +0000 (11:38 +0100)]
[API] get / put NgramsList (todo: tests)

4 years ago[FIX] Tree root design fun.
Alexandre Delanoë [Wed, 26 Feb 2020 13:59:22 +0000 (14:59 +0100)]
[FIX] Tree root design fun.

4 years ago[NodeUser] fake data (basic)
Alexandre Delanoë [Wed, 26 Feb 2020 10:23:14 +0000 (11:23 +0100)]
[NodeUser] fake data (basic)

4 years ago[API] Node User
Alexandre Delanoë [Tue, 25 Feb 2020 10:05:42 +0000 (11:05 +0100)]
[API] Node User

4 years ago[FEAT] NodeUser type.
Alexandre Delanoë [Mon, 24 Feb 2020 14:02:42 +0000 (15:02 +0100)]
[FEAT] NodeUser type.

4 years ago[PAR] fib route
Alexandre Delanoë [Fri, 21 Feb 2020 18:56:14 +0000 (19:56 +0100)]
[PAR] fib route

4 years ago[FIX] Tree filtering.
Alexandre Delanoë [Fri, 21 Feb 2020 14:00:48 +0000 (15:00 +0100)]
[FIX] Tree filtering.

4 years ago[FEAT] getMaxCliques function.
Alexandre Delanoë [Thu, 20 Feb 2020 13:41:23 +0000 (14:41 +0100)]
[FEAT] getMaxCliques function.

4 years agoMerge branch 'dev-phylo' into dev
Alexandre Delanoë [Thu, 20 Feb 2020 12:34:39 +0000 (13:34 +0100)]
Merge branch 'dev-phylo' into dev

4 years agoMerge branch 'dev-phylo' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantex...
Alexandre Delanoë [Thu, 20 Feb 2020 11:09:26 +0000 (12:09 +0100)]
Merge branch 'dev-phylo' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-phylo

4 years agoworking on export
qlobbe [Thu, 20 Feb 2020 11:06:02 +0000 (12:06 +0100)]
working on export

4 years ago[FIX] merge
Alexandre Delanoë [Wed, 19 Feb 2020 13:03:03 +0000 (14:03 +0100)]
[FIX] merge

4 years ago[Dashboard] allow storing charts in the dashboard node
Przemek Kaminski [Wed, 19 Feb 2020 05:51:15 +0000 (06:51 +0100)]
[Dashboard] allow storing charts in the dashboard node

4 years ago[static] use file server, this way index.html is served by default
Przemek Kaminski [Tue, 18 Feb 2020 17:21:29 +0000 (18:21 +0100)]
[static] use file server, this way index.html is served by default

4 years ago[static] fix API ordering
Przemek Kaminski [Tue, 18 Feb 2020 17:14:26 +0000 (18:14 +0100)]
[static] fix API ordering

Static (at root) has to be last so that API matches.

4 years ago[static] use servant static file server
Przemek Kaminski [Tue, 18 Feb 2020 17:07:09 +0000 (18:07 +0100)]
[static] use servant static file server

This is instead of the Servant.Static.TH which bundles the files at
compilation into the binary.

4 years ago[FIX] Annuaire / Team Node creation
Alexandre Delanoë [Tue, 18 Feb 2020 16:08:26 +0000 (17:08 +0100)]
[FIX] Annuaire / Team Node creation

4 years agoMerge branch 'dev-merge' into dev-dashoard-charts
Przemek Kaminski [Tue, 18 Feb 2020 08:51:58 +0000 (09:51 +0100)]
Merge branch 'dev-merge' into dev-dashoard-charts