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11 months agoMerge branch 'dev' into dev-openalex
Przemysław Kaminski [Thu, 29 Jun 2023 12:39:18 +0000 (14:39 +0200)]
Merge branch 'dev' into dev-openalex

11 months ago[openalex] use search instead of filter
Przemysław Kaminski [Thu, 29 Jun 2023 04:52:56 +0000 (06:52 +0200)]
[openalex] use search instead of filter

11 months ago[FIX] Install
Alexandre Delanoë [Wed, 28 Jun 2023 16:03:30 +0000 (18:03 +0200)]
[FIX] Install

11 months ago[FIX] admin
Alexandre Delanoë [Wed, 28 Jun 2023 14:33:39 +0000 (16:33 +0200)]
[FIX] admin

11 months agoUpdate CI and docker image
Alfredo Di Napoli [Wed, 28 Jun 2023 14:02:56 +0000 (16:02 +0200)]
Update CI and docker image

11 months agoDo not ignore gargantext.cabal
Alfredo Di Napoli [Wed, 28 Jun 2023 10:45:51 +0000 (12:45 +0200)]
Do not ignore gargantext.cabal

11 months agoRIP package.yaml
Alfredo Di Napoli [Wed, 28 Jun 2023 10:36:01 +0000 (12:36 +0200)]
RIP package.yaml

11 months ago[BIN] install
Alexandre Delanoë [Wed, 28 Jun 2023 10:52:26 +0000 (12:52 +0200)]
[BIN] install

11 months ago[FIX] Cabal
Alexandre Delanoë [Wed, 28 Jun 2023 10:50:56 +0000 (12:50 +0200)]
[FIX] Cabal

11 months ago[FIX] update schema
Alexandre Delanoë [Wed, 28 Jun 2023 08:19:26 +0000 (10:19 +0200)]
[FIX] update schema

11 months agoInitial version of the project that builds with cabal
Alfredo Di Napoli [Tue, 27 Jun 2023 14:27:59 +0000 (16:27 +0200)]
Initial version of the project that builds with cabal

11 months ago[FIX] Nix Config
Alexandre Delanoë [Tue, 27 Jun 2023 10:00:24 +0000 (12:00 +0200)]
[FIX] Nix Config

11 months agoinstall
Alexandre Delanoë [Wed, 28 Jun 2023 14:20:00 +0000 (16:20 +0200)]
install

11 months ago[FIX]
Alexandre Delanoë [Wed, 28 Jun 2023 13:53:32 +0000 (15:53 +0200)]
[FIX]

11 months agofix the shape and the font
qlobbe [Wed, 28 Jun 2023 13:33:55 +0000 (15:33 +0200)]
fix the shape and the font

11 months agofix the shape
qlobbe [Wed, 28 Jun 2023 13:31:14 +0000 (15:31 +0200)]
fix the shape

11 months agofix the invalid chart
qlobbe [Tue, 27 Jun 2023 14:37:46 +0000 (16:37 +0200)]
fix the invalid chart

11 months ago[FIX] admin
Alexandre Delanoë [Wed, 28 Jun 2023 14:33:39 +0000 (16:33 +0200)]
[FIX] admin

11 months ago[FIX] NIX
Alexandre Delanoë [Wed, 28 Jun 2023 13:53:32 +0000 (15:53 +0200)]
[FIX] NIX

11 months agoMerge remote-tracking branch 'origin/dev-openalex' into dev
Alexandre Delanoë [Wed, 28 Jun 2023 13:35:56 +0000 (15:35 +0200)]
Merge remote-tracking branch 'origin/dev-openalex' into dev

11 months agoMerge remote-tracking branch 'origin/dev-phylo' into dev
Alexandre Delanoë [Wed, 28 Jun 2023 13:35:12 +0000 (15:35 +0200)]
Merge remote-tracking branch 'origin/dev-phylo' into dev

11 months agofix the shape and the font
qlobbe [Wed, 28 Jun 2023 13:33:55 +0000 (15:33 +0200)]
fix the shape and the font

11 months agofix the shape
qlobbe [Wed, 28 Jun 2023 13:31:14 +0000 (15:31 +0200)]
fix the shape

11 months agoMerge branch 'dev' into dev-openalex
Przemysław Kaminski [Wed, 28 Jun 2023 13:20:46 +0000 (15:20 +0200)]
Merge branch 'dev' into dev-openalex

11 months ago[openalex] Database type fixed
Przemysław Kaminski [Wed, 28 Jun 2023 12:35:56 +0000 (14:35 +0200)]
[openalex] Database type fixed

11 months ago[BIN] install
Alexandre Delanoë [Wed, 28 Jun 2023 10:52:26 +0000 (12:52 +0200)]
[BIN] install

11 months ago[FIX] Cabal
Alexandre Delanoë [Wed, 28 Jun 2023 10:50:56 +0000 (12:50 +0200)]
[FIX] Cabal

11 months agoMerge branch 'dev' into dev-openalex
Przemysław Kaminski [Wed, 28 Jun 2023 10:47:18 +0000 (12:47 +0200)]
Merge branch 'dev' into dev-openalex

11 months ago[openalex] first attempt on integration this
Przemysław Kaminski [Wed, 28 Jun 2023 10:46:24 +0000 (12:46 +0200)]
[openalex] first attempt on integration this

11 months agoMerge branch 'adinapoli/improve-cabal' into dev
Alexandre Delanoë [Wed, 28 Jun 2023 10:44:17 +0000 (12:44 +0200)]
Merge branch 'adinapoli/improve-cabal' into dev

11 months agoUpdate cabal-install to 3.10.1.0 via overlays
Alfredo Di Napoli [Wed, 28 Jun 2023 10:24:41 +0000 (12:24 +0200)]
Update cabal-install to 3.10.1.0 via overlays

11 months ago[FIX] update schema
Alexandre Delanoë [Wed, 28 Jun 2023 08:19:26 +0000 (10:19 +0200)]
[FIX] update schema

11 months agoMerge remote-tracking branch 'origin/dev-phylo' into dev
Alexandre Delanoë [Wed, 28 Jun 2023 08:04:36 +0000 (10:04 +0200)]
Merge remote-tracking branch 'origin/dev-phylo' into dev

11 months agoAdd .clippy.dhall to package.yaml, force hpack installation in update-cabal-project...
Alfredo Di Napoli [Wed, 28 Jun 2023 07:43:07 +0000 (09:43 +0200)]
Add .clippy.dhall to package.yaml, force hpack installation in update-cabal-project script

11 months ago[FIX] Cabal
Alexandre Delanoë [Tue, 27 Jun 2023 15:40:45 +0000 (17:40 +0200)]
[FIX] Cabal

11 months ago[FIX] Cabal clippy
Alexandre Delanoë [Tue, 27 Jun 2023 15:30:08 +0000 (17:30 +0200)]
[FIX] Cabal clippy

11 months agoMerge branch 'adinapoli/try-stack2cabal' into dev
Alexandre Delanoë [Tue, 27 Jun 2023 15:29:55 +0000 (17:29 +0200)]
Merge branch 'adinapoli/try-stack2cabal' into dev

11 months agofix the invalid chart
qlobbe [Tue, 27 Jun 2023 14:37:46 +0000 (16:37 +0200)]
fix the invalid chart

11 months agoInitial version of the project that builds with cabal
Alfredo Di Napoli [Tue, 27 Jun 2023 14:27:59 +0000 (16:27 +0200)]
Initial version of the project that builds with cabal

11 months agoAlmost working version of cabal build
Alfredo Di Napoli [Tue, 27 Jun 2023 14:05:52 +0000 (16:05 +0200)]
Almost working version of cabal build

11 months agoInitial work to support building with cabal
Alfredo Di Napoli [Tue, 27 Jun 2023 09:13:07 +0000 (11:13 +0200)]
Initial work to support building with cabal

11 months ago[ERGO] Sending email at the end of phylo
Alexandre Delanoë [Tue, 27 Jun 2023 13:58:10 +0000 (15:58 +0200)]
[ERGO] Sending email at the end of phylo

11 months ago[FIX] Nix Config
Alexandre Delanoë [Tue, 27 Jun 2023 10:00:24 +0000 (12:00 +0200)]
[FIX] Nix Config

11 months ago[VERSION] +1 to 0.0.6.9.9.7
Alexandre Delanoë [Tue, 27 Jun 2023 09:06:16 +0000 (11:06 +0200)]
[VERSION] +1 to 0.0.6.9.9.7

11 months ago[FIX] Licence
Alexandre Delanoë [Tue, 27 Jun 2023 09:04:05 +0000 (11:04 +0200)]
[FIX] Licence

11 months agoMerge remote-tracking branch 'origin/dev-phylo' into dev-merge
Alexandre Delanoë [Tue, 27 Jun 2023 08:55:23 +0000 (10:55 +0200)]
Merge remote-tracking branch 'origin/dev-phylo' into dev-merge

11 months ago[FIX] Nix shell install
Alexandre Delanoë [Tue, 27 Jun 2023 08:54:37 +0000 (10:54 +0200)]
[FIX] Nix shell install

11 months agofix the synchronic clustering
qlobbe [Tue, 27 Jun 2023 07:19:52 +0000 (09:19 +0200)]
fix the synchronic clustering

11 months ago[FIX] Print phylo dev
Alexandre Delanoë [Mon, 26 Jun 2023 15:28:20 +0000 (17:28 +0200)]
[FIX] Print phylo

11 months agoresolve the conflict
qlobbe [Mon, 26 Jun 2023 14:11:42 +0000 (16:11 +0200)]
resolve the conflict

11 months ago[FIX] DefaultMode for phylo
Alexandre Delanoë [Mon, 26 Jun 2023 13:42:46 +0000 (15:42 +0200)]
[FIX] DefaultMode for phylo

11 months ago[FIX] Phylo
Alexandre Delanoë [Wed, 21 Jun 2023 13:43:40 +0000 (15:43 +0200)]
[FIX] Phylo

11 months agomaybe fix the phylo issue
qlobbe [Wed, 21 Jun 2023 12:22:17 +0000 (14:22 +0200)]
maybe fix the phylo issue

11 months ago[VERSION] +1 to 0.0.6.9.9.6.9
Alexandre Delanoë [Wed, 21 Jun 2023 08:47:43 +0000 (10:47 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.9

11 months agoMerge remote-tracking branch 'origin/506-dev-tree-search-fix' into dev
Alexandre Delanoë [Wed, 21 Jun 2023 08:46:43 +0000 (10:46 +0200)]
Merge remote-tracking branch 'origin/506-dev-tree-search-fix' into dev

11 months ago[VERSION] +1 to 0.0.6.9.9.6.8
Alexandre Delanoë [Wed, 21 Jun 2023 08:44:08 +0000 (10:44 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.8

11 months agoMerge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2
Przemysław Kaminski [Wed, 21 Jun 2023 08:27:41 +0000 (10:27 +0200)]
Merge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2

11 months ago[pubmed] implement pubmed api key in hyperdata user
Przemysław Kaminski [Wed, 21 Jun 2023 08:23:31 +0000 (10:23 +0200)]
[pubmed] implement pubmed api key in hyperdata user

11 months ago[Tree search] Search in shared folders
Karen Konou [Wed, 21 Jun 2023 08:19:43 +0000 (10:19 +0200)]
[Tree search] Search in shared folders

11 months ago[FIX] Update Node Phylo
Alexandre Delanoë [Tue, 20 Jun 2023 21:18:32 +0000 (23:18 +0200)]
[FIX] Update Node Phylo

11 months ago[node] fix pubmed JSON serialization
Przemysław Kaminski [Tue, 20 Jun 2023 15:54:18 +0000 (17:54 +0200)]
[node] fix pubmed JSON serialization

11 months agoMerge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2
Przemysław Kaminski [Tue, 20 Jun 2023 14:54:25 +0000 (16:54 +0200)]
Merge branch 'dev' into 571-dev-node-corpus-api-search-fixes-take-2

11 months agoMerge remote-tracking branch 'origin/revert-0b51636b' into dev
Alexandre Delanoë [Tue, 20 Jun 2023 14:53:13 +0000 (16:53 +0200)]
Merge remote-tracking branch 'origin/revert-0b51636b' into dev

11 months ago[FIX] Phylo default mode
Alexandre Delanoë [Tue, 20 Jun 2023 14:52:59 +0000 (16:52 +0200)]
[FIX] Phylo default mode

11 months agoRevert "Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes...
Przemyslaw Kaminski [Tue, 20 Jun 2023 14:51:02 +0000 (16:51 +0200)]
Revert "Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev-merge"

This reverts merge request !166

11 months ago[errors] better handling of garg job errors
Przemysław Kaminski [Tue, 20 Jun 2023 05:43:38 +0000 (07:43 +0200)]
[errors] better handling of garg job errors

JSON should now be better so that the UI can handle it in task async
handler.

11 months ago[VERSION] +1 to 0.0.6.9.9.6.7
Alexandre Delanoë [Tue, 20 Jun 2023 13:31:06 +0000 (15:31 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.7

11 months agoMerge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev...
Alexandre Delanoë [Tue, 20 Jun 2023 13:29:16 +0000 (15:29 +0200)]
Merge remote-tracking branch 'origin/571-dev-node-corpus-api-search-fixes' into dev-merge

11 months agoMerge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge
Alexandre Delanoë [Tue, 20 Jun 2023 13:28:52 +0000 (15:28 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge

11 months ago[MERGE] Phylo
Alexandre Delanoë [Tue, 20 Jun 2023 13:28:45 +0000 (15:28 +0200)]
[MERGE] Phylo

11 months agoAdd Phylo golden tests
Alfredo Di Napoli [Tue, 20 Jun 2023 07:31:03 +0000 (09:31 +0200)]
Add Phylo golden tests

11 months agoInitial work on the GraphData for Phylio GraphData
Alfredo Di Napoli [Mon, 19 Jun 2023 14:54:13 +0000 (16:54 +0200)]
Initial work on the GraphData for Phylio GraphData

11 months ago[errors] better handling of garg job errors
Przemysław Kaminski [Tue, 20 Jun 2023 05:43:38 +0000 (07:43 +0200)]
[errors] better handling of garg job errors

JSON should now be better so that the UI can handle it in task async
handler.

11 months ago[json] bring back previous JSON serialization of Datafield
Przemysław Kaminski [Mon, 19 Jun 2023 17:27:14 +0000 (19:27 +0200)]
[json] bring back previous JSON serialization of Datafield

11 months agoRevert b3fb1a1697d18777af6b401c132c39a5c905e129
Przemysław Kaminski [Mon, 19 Jun 2023 17:03:32 +0000 (19:03 +0200)]
Revert b3fb1a1697d18777af6b401c132c39a5c905e129

This reverts commit b3fb1a1697d18777af6b401c132c39a5c905e129

It introduced changes which cause issues described in
https://gitlab.iscpif.fr/gargantext/purescript-gargantext/issues/571

11 months agoMerge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge
Alexandre Delanoë [Mon, 19 Jun 2023 13:51:16 +0000 (15:51 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-phylo-types' into dev-merge

11 months agoPartial support for bidirectional PhyloData parsing
Alfredo Di Napoli [Mon, 19 Jun 2023 13:17:53 +0000 (15:17 +0200)]
Partial support for bidirectional PhyloData parsing

This commits changes the `PhyloData` data structure to
include a proper `GraphData` in the `pd_data` field. The
`GraphData` is almost complete, but the `objects` field needs
to be further refined from a generic JSON `Value` to proper
Haskell types.

11 months agoMerge remote-tracking branch 'origin/adinapoli/fix-datafield-instance' into dev-merge
Alexandre Delanoë [Mon, 19 Jun 2023 11:41:50 +0000 (13:41 +0200)]
Merge remote-tracking branch 'origin/adinapoli/fix-datafield-instance' into dev-merge

11 months agoAdd JSON roundtrip tests for Datafield and WithQuery
Alfredo Di Napoli [Mon, 19 Jun 2023 09:29:05 +0000 (11:29 +0200)]
Add JSON roundtrip tests for Datafield and WithQuery

11 months ago[VERSION] +1 to 0.0.6.9.9.6.6
Alexandre Delanoë [Mon, 19 Jun 2023 08:16:28 +0000 (10:16 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.6

11 months ago[FIX] Phylo is back
Alexandre Delanoë [Mon, 19 Jun 2023 08:14:56 +0000 (10:14 +0200)]
[FIX] Phylo is back

11 months agoRevert "Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key...
Alexandre Delanoë [Mon, 19 Jun 2023 07:42:53 +0000 (09:42 +0200)]
Revert "Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev""

This reverts commit a444cb3000bbc36c1328d7d7788257a557d0abc8.

11 months agoRevert "Try the hotfix"
Alexandre Delanoë [Mon, 19 Jun 2023 07:42:45 +0000 (09:42 +0200)]
Revert "Try the hotfix"

This reverts commit 22b14f561106ded3520b5b4672d169491f1d4beb.

11 months ago[MERGE] Phylo
Alexandre Delanoë [Sun, 18 Jun 2023 20:00:48 +0000 (22:00 +0200)]
[MERGE] Phylo

11 months agoTry the hotfix
Alfredo Di Napoli [Fri, 16 Jun 2023 14:41:57 +0000 (16:41 +0200)]
Try the hotfix

11 months agoRevert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev"
Alfredo Di Napoli [Fri, 16 Jun 2023 13:57:13 +0000 (15:57 +0200)]
Revert "Merge remote-tracking branch 'origin/201-dev-user-pubmed-api-key' into dev"

This reverts commit d04cf03b00ed6c8ba8bd685044b897e4df701eee, reversing
changes made to e213a4bfe8a4be983f4a9be2f6a62308e6b27d6f.

11 months agoadaptative time fixed
qlobbe [Thu, 15 Jun 2023 14:39:38 +0000 (16:39 +0200)]
adaptative time fixed

11 months ago[VERSION] +1 to 0.0.6.9.9.6.5
Alexandre Delanoë [Thu, 15 Jun 2023 09:36:49 +0000 (11:36 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.5

11 months ago[FIX] Order 2
Alexandre Delanoë [Thu, 15 Jun 2023 09:31:39 +0000 (11:31 +0200)]
[FIX] Order 2

11 months ago[FIX/FEAT] Order 2 improvement
Alexandre Delanoë [Wed, 7 Jun 2023 07:11:23 +0000 (09:11 +0200)]
[FIX/FEAT] Order 2 improvement

11 months ago[VERSION] +1 to 0.0.6.9.9.6.4
Alexandre Delanoë [Wed, 14 Jun 2023 15:39:49 +0000 (17:39 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.4

11 months ago[DOC] Renaming
Alexandre Delanoë [Wed, 14 Jun 2023 15:34:10 +0000 (17:34 +0200)]
[DOC] Renaming

11 months ago[FIX] SQL
Alexandre Delanoë [Wed, 14 Jun 2023 15:31:04 +0000 (17:31 +0200)]
[FIX] SQL

11 months agoMerge branch 'dev' into 551-dev-graphql-contexts-ngrams
Przemysław Kaminski [Tue, 13 Jun 2023 15:56:44 +0000 (17:56 +0200)]
Merge branch 'dev' into 551-dev-graphql-contexts-ngrams

11 months ago[ngrams] use saveNodeStoryImmediate, fix ordering with insertNgrams
Przemysław Kaminski [Tue, 13 Jun 2023 09:20:51 +0000 (11:20 +0200)]
[ngrams] use saveNodeStoryImmediate, fix ordering with insertNgrams

11 months ago[ngrams] small refactorings
Przemysław Kaminski [Tue, 13 Jun 2023 09:20:41 +0000 (11:20 +0200)]
[ngrams] small refactorings

11 months agoadaptative time scale with phylo 1click
qlobbe [Mon, 12 Jun 2023 11:38:17 +0000 (13:38 +0200)]
adaptative time scale with phylo 1click

11 months ago[VERSION] +1 to 0.0.6.9.9.6.3
Alexandre Delanoë [Mon, 12 Jun 2023 08:37:16 +0000 (10:37 +0200)]
[VERSION] +1 to 0.0.6.9.9.6.3

11 months agoMerge remote-tracking branch 'origin/adinapoli/issue-182' into dev-merge
Alexandre Delanoë [Mon, 12 Jun 2023 08:15:40 +0000 (10:15 +0200)]
Merge remote-tracking branch 'origin/adinapoli/issue-182' into dev-merge

11 months agoAdd opt-in integration tests for Arxiv and PubMed
Alfredo Di Napoli [Mon, 12 Jun 2023 07:29:03 +0000 (09:29 +0200)]
Add opt-in integration tests for Arxiv and PubMed