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4 years ago[API] Add corpus username/uid.
Alexandre Delanoë [Mon, 6 Apr 2020 13:56:54 +0000 (15:56 +0200)]
[API] Add corpus username/uid.

4 years ago[Async] Corpus New addToCorpusWithForm
Alexandre Delanoë [Mon, 6 Apr 2020 13:02:05 +0000 (15:02 +0200)]
[Async] Corpus New addToCorpusWithForm

4 years ago[Jobs] Instances Show ScraperStatus
Alexandre Delanoë [Mon, 6 Apr 2020 12:45:22 +0000 (14:45 +0200)]
[Jobs] Instances Show ScraperStatus

4 years agowhere->let
Nicolas Pouillard [Mon, 6 Apr 2020 12:39:28 +0000 (14:39 +0200)]
where->let

4 years agoDebug info in addCorpusWithForm
Nicolas Pouillard [Mon, 6 Apr 2020 12:26:44 +0000 (14:26 +0200)]
Debug info in addCorpusWithForm

4 years ago[ASYNC] for tests
Alexandre Delanoë [Mon, 6 Apr 2020 12:21:35 +0000 (14:21 +0200)]
[ASYNC] for tests

4 years ago[Async] back (corpus input test) but still needs work.
Alexandre Delanoë [Sat, 4 Apr 2020 10:57:28 +0000 (12:57 +0200)]
[Async] back (corpus input test) but still needs work.

4 years agoMerge branch 'dev-graph-async' into dev
Alexandre Delanoë [Sat, 4 Apr 2020 05:48:21 +0000 (07:48 +0200)]
Merge branch 'dev-graph-async' into dev

4 years agoMerge branch 'patch-1' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext...
Alexandre Delanoë [Fri, 3 Apr 2020 16:11:20 +0000 (18:11 +0200)]
Merge branch 'patch-1' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-patch

4 years ago[graph] graph versoin refresh endpoint
Przemek Kaminski [Fri, 3 Apr 2020 14:47:49 +0000 (16:47 +0200)]
[graph] graph versoin refresh endpoint

4 years agoCorrect possible typo
Mael NICOLAS [Thu, 2 Apr 2020 08:16:53 +0000 (10:16 +0200)]
Correct possible typo

4 years ago[Graph] more graph async work
Przemek Kaminski [Thu, 2 Apr 2020 06:35:31 +0000 (08:35 +0200)]
[Graph] more graph async work

4 years ago[Graph] getGraph doesn't recompute new graph version
Przemek Kaminski [Thu, 2 Apr 2020 05:15:02 +0000 (07:15 +0200)]
[Graph] getGraph doesn't recompute new graph version

Instead, I added a 'recomputeGraph' function to call it via servant
job. getGraph computes new graph only when it doesn't exist.

4 years ago[Graph] Haskell version removing the c++ one (tech+legal issue mainly).
Alexandre Delanoë [Wed, 1 Apr 2020 06:17:53 +0000 (08:17 +0200)]
[Graph] Haskell version removing the c++ one (tech+legal issue mainly).

4 years ago[GRAPH] Async Route
Alexandre Delanoë [Wed, 1 Apr 2020 06:06:56 +0000 (08:06 +0200)]
[GRAPH] Async Route

4 years agolists endpoint should accept JSON
justinwoo [Fri, 20 Mar 2020 09:35:41 +0000 (11:35 +0200)]
lists endpoint should accept JSON

4 years ago[FIX] Garg Version api.
Alexandre Delanoë [Thu, 19 Mar 2020 13:10:11 +0000 (14:10 +0100)]
[FIX] Garg Version api.

4 years agoMerge branch 'dev-version' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargant...
Alexandre Delanoë [Thu, 19 Mar 2020 09:28:25 +0000 (10:28 +0100)]
Merge branch 'dev-version' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years agoMerge branch 'update-build-shell-nix-merge' of ssh://gitlab.iscpif.fr:20022/gargantex...
Alexandre Delanoë [Thu, 19 Mar 2020 09:26:10 +0000 (10:26 +0100)]
Merge branch 'update-build-shell-nix-merge' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years ago[Optims]
Alexandre Delanoë [Thu, 19 Mar 2020 09:25:06 +0000 (10:25 +0100)]
[Optims]

4 years ago[version] add version info
Przemek Kaminski [Wed, 18 Mar 2020 09:20:57 +0000 (10:20 +0100)]
[version] add version info

NOTE: API doesn't compile yet.

4 years agoMerge branch 'update-build-shell.nix' of ssh://gitlab.iscpif.fr:20022/gargantext...
Przemek Kaminski [Wed, 18 Mar 2020 06:00:31 +0000 (07:00 +0100)]
Merge branch 'update-build-shell.nix' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into update-build-shell.nix

4 years agoupdate shell.nix nixpkgs
justinwoo [Tue, 3 Mar 2020 19:20:31 +0000 (21:20 +0200)]
update shell.nix nixpkgs

4 years agoupdate build-shell.nix and add gfortran as extra-libraries
justinwoo [Mon, 2 Mar 2020 17:26:12 +0000 (19:26 +0200)]
update build-shell.nix and add gfortran as extra-libraries

this makes `stack build --nix` work without extra system dependencies

4 years ago[graph] add gexf API endpoint
Przemek Kaminski [Fri, 13 Mar 2020 12:17:03 +0000 (13:17 +0100)]
[graph] add gexf API endpoint

4 years ago[Graph] add gexf exporter to graph endpoint
Przemek Kaminski [Fri, 13 Mar 2020 11:43:33 +0000 (12:43 +0100)]
[Graph] add gexf exporter to graph endpoint

4 years ago[docker] update image, add README info
Przemek Kaminski [Fri, 13 Mar 2020 05:50:07 +0000 (06:50 +0100)]
[docker] update image, add README info

4 years ago[OPTIM] MVar for Graph Clustering.
Alexandre Delanoë [Fri, 6 Mar 2020 14:02:05 +0000 (15:02 +0100)]
[OPTIM] MVar for Graph Clustering.

4 years ago[DOC] comments
Alexandre Delanoë [Thu, 5 Mar 2020 15:57:21 +0000 (16:57 +0100)]
[DOC] comments

4 years ago[FEAT] post list now set new list as list (and remove previous one).
Alexandre Delanoë [Thu, 5 Mar 2020 15:54:43 +0000 (16:54 +0100)]
[FEAT] post list now set new list as list (and remove previous one).

4 years ago[FEAT] NgramsList upload
Alexandre Delanoë [Thu, 5 Mar 2020 14:38:00 +0000 (15:38 +0100)]
[FEAT] NgramsList upload

4 years ago[FIX] Lists route.
Alexandre Delanoë [Wed, 4 Mar 2020 17:00:05 +0000 (18:00 +0100)]
[FIX] Lists route.

4 years agoMerge branch 'dev-file-name' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-garga...
Alexandre Delanoë [Wed, 4 Mar 2020 15:36:29 +0000 (16:36 +0100)]
Merge branch 'dev-file-name' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev

4 years ago[API] file name added to corpus new endpoint
Przemek Kaminski [Wed, 4 Mar 2020 15:18:43 +0000 (16:18 +0100)]
[API] file name added to corpus new endpoint

4 years agoMerge branch 'dev-list-downloadable-with-content-type' into dev
Alexandre Delanoë [Wed, 4 Mar 2020 12:28:36 +0000 (13:28 +0100)]
Merge branch 'dev-list-downloadable-with-content-type' into dev

4 years ago[FIX] cosmetics name
Alexandre Delanoë [Wed, 4 Mar 2020 12:28:28 +0000 (13:28 +0100)]
[FIX] cosmetics name

4 years ago[List] filename for content-disposition
Przemek Kaminski [Wed, 4 Mar 2020 10:06:31 +0000 (11:06 +0100)]
[List] filename for content-disposition

4 years ago[FIX] addHeader - String -> Text
Alexandre Delanoë [Wed, 4 Mar 2020 09:27:42 +0000 (10:27 +0100)]
[FIX] addHeader - String -> Text

4 years ago[List] fix Content-Disposition
Przemek Kaminski [Wed, 4 Mar 2020 09:20:33 +0000 (10:20 +0100)]
[List] fix Content-Disposition

4 years ago[List] add Content-Type header info to list download
Przemek Kaminski [Wed, 4 Mar 2020 09:19:46 +0000 (10:19 +0100)]
[List] add Content-Type header info to list download

Unfortunately, this doesn't compile.

4 years ago[API] disable xsrf for cookie GET requests
Przemek Kaminski [Wed, 4 Mar 2020 09:16:21 +0000 (10:16 +0100)]
[API] disable xsrf for cookie GET requests

Also, list API works now.  Only the file isn't downloaded yet.

4 years agoMerge branch 'dev' into update-build-shell.nix
Przemek Kaminski [Wed, 4 Mar 2020 06:02:59 +0000 (07:02 +0100)]
Merge branch 'dev' into update-build-shell.nix

4 years agoupdate shell.nix nixpkgs
justinwoo [Tue, 3 Mar 2020 19:20:31 +0000 (21:20 +0200)]
update shell.nix nixpkgs

4 years agoupdate build-shell.nix and add gfortran as extra-libraries
justinwoo [Mon, 2 Mar 2020 17:26:12 +0000 (19:26 +0200)]
update build-shell.nix and add gfortran as extra-libraries

this makes `stack build --nix` work without extra system dependencies

4 years ago[FIX] SQL read only
Alexandre Delanoë [Tue, 3 Mar 2020 11:08:12 +0000 (12:08 +0100)]
[FIX] SQL read only

4 years ago[list] add HTML list get endpoint
Przemek Kaminski [Tue, 3 Mar 2020 11:02:18 +0000 (12:02 +0100)]
[list] add HTML list get endpoint

4 years ago[OPTIM] concurrent threads (fix mem leaks)
Alexandre Delanoë [Mon, 2 Mar 2020 14:25:53 +0000 (15:25 +0100)]
[OPTIM] concurrent threads (fix mem leaks)

4 years ago[FIX] Graph concurrency.
Alexandre Delanoë [Mon, 2 Mar 2020 11:29:50 +0000 (12:29 +0100)]
[FIX] Graph concurrency.

4 years agopin nixpkgs and prepare shell.nix
justinwoo [Mon, 2 Mar 2020 08:17:28 +0000 (10:17 +0200)]
pin nixpkgs and prepare shell.nix

4 years ago[API] get / put NgramsList (todo: tests)
Alexandre Delanoë [Fri, 28 Feb 2020 10:38:49 +0000 (11:38 +0100)]
[API] get / put NgramsList (todo: tests)

4 years ago[FIX] Tree root design fun.
Alexandre Delanoë [Wed, 26 Feb 2020 13:59:22 +0000 (14:59 +0100)]
[FIX] Tree root design fun.

4 years ago[NodeUser] fake data (basic)
Alexandre Delanoë [Wed, 26 Feb 2020 10:23:14 +0000 (11:23 +0100)]
[NodeUser] fake data (basic)

4 years ago[API] Node User
Alexandre Delanoë [Tue, 25 Feb 2020 10:05:42 +0000 (11:05 +0100)]
[API] Node User

4 years ago[FEAT] NodeUser type.
Alexandre Delanoë [Mon, 24 Feb 2020 14:02:42 +0000 (15:02 +0100)]
[FEAT] NodeUser type.

4 years ago[PAR] fib route
Alexandre Delanoë [Fri, 21 Feb 2020 18:56:14 +0000 (19:56 +0100)]
[PAR] fib route

4 years ago[FIX] Tree filtering.
Alexandre Delanoë [Fri, 21 Feb 2020 14:00:48 +0000 (15:00 +0100)]
[FIX] Tree filtering.

4 years agoMerge branch 'dev' into dev-phylo
qlobbe [Thu, 20 Feb 2020 13:44:16 +0000 (14:44 +0100)]
Merge branch 'dev' into dev-phylo

4 years agoworking on maxClique
qlobbe [Thu, 20 Feb 2020 13:42:56 +0000 (14:42 +0100)]
working on maxClique

4 years ago[FEAT] getMaxCliques function.
Alexandre Delanoë [Thu, 20 Feb 2020 13:41:23 +0000 (14:41 +0100)]
[FEAT] getMaxCliques function.

4 years agoMerge branch 'dev-phylo' into dev
Alexandre Delanoë [Thu, 20 Feb 2020 12:34:39 +0000 (13:34 +0100)]
Merge branch 'dev-phylo' into dev

4 years agoMerge branch 'dev-phylo' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantex...
Alexandre Delanoë [Thu, 20 Feb 2020 11:09:26 +0000 (12:09 +0100)]
Merge branch 'dev-phylo' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-phylo

4 years agoworking on export
qlobbe [Thu, 20 Feb 2020 11:06:02 +0000 (12:06 +0100)]
working on export

4 years ago[FIX] merge
Alexandre Delanoë [Wed, 19 Feb 2020 13:03:03 +0000 (14:03 +0100)]
[FIX] merge

4 years ago[Dashboard] allow storing charts in the dashboard node
Przemek Kaminski [Wed, 19 Feb 2020 05:51:15 +0000 (06:51 +0100)]
[Dashboard] allow storing charts in the dashboard node

4 years ago[static] use file server, this way index.html is served by default
Przemek Kaminski [Tue, 18 Feb 2020 17:21:29 +0000 (18:21 +0100)]
[static] use file server, this way index.html is served by default

4 years ago[static] fix API ordering
Przemek Kaminski [Tue, 18 Feb 2020 17:14:26 +0000 (18:14 +0100)]
[static] fix API ordering

Static (at root) has to be last so that API matches.

4 years ago[static] use servant static file server
Przemek Kaminski [Tue, 18 Feb 2020 17:07:09 +0000 (18:07 +0100)]
[static] use servant static file server

This is instead of the Servant.Static.TH which bundles the files at
compilation into the binary.

4 years ago[FIX] Annuaire / Team Node creation
Alexandre Delanoë [Tue, 18 Feb 2020 16:08:26 +0000 (17:08 +0100)]
[FIX] Annuaire / Team Node creation

4 years agoMerge branch 'dev-merge' into dev-dashoard-charts
Przemek Kaminski [Tue, 18 Feb 2020 08:51:58 +0000 (09:51 +0100)]
Merge branch 'dev-merge' into dev-dashoard-charts

4 years agoMerge branch 'dev' into dev-dashoard-charts
Przemek Kaminski [Tue, 18 Feb 2020 08:38:37 +0000 (09:38 +0100)]
Merge branch 'dev' into dev-dashoard-charts

4 years agocosmetics reading
Alexandre Delanoë [Tue, 18 Feb 2020 06:58:29 +0000 (07:58 +0100)]
cosmetics reading

4 years agoMerge branch 'dev-dashoard-charts' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell...
Alexandre Delanoë [Mon, 17 Feb 2020 15:31:37 +0000 (16:31 +0100)]
Merge branch 'dev-dashoard-charts' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years agoMerge branch 'dev-getting-started-readme' of ssh://gitlab.iscpif.fr:20022/gargantext...
Alexandre Delanoë [Mon, 17 Feb 2020 14:59:16 +0000 (15:59 +0100)]
Merge branch 'dev-getting-started-readme' of ssh://gitlab.iscpif.fr:20022/gargantext/haskell-gargantext into dev-merge

4 years agoMerge branch 'dev' into dev-getting-started-readme
Przemek Kaminski [Fri, 14 Feb 2020 06:32:01 +0000 (07:32 +0100)]
Merge branch 'dev' into dev-getting-started-readme

4 years agoadd branch w and t
qlobbe [Tue, 11 Feb 2020 16:10:52 +0000 (17:10 +0100)]
add branch w and t

4 years ago[annuaire] typo fix in annuaire async upload url
Przemek Kaminski [Fri, 7 Feb 2020 14:53:48 +0000 (15:53 +0100)]
[annuaire] typo fix in annuaire async upload url

4 years ago[Annuaire] async file upload stub
Przemek Kaminski [Fri, 7 Feb 2020 13:24:17 +0000 (14:24 +0100)]
[Annuaire] async file upload stub

4 years ago[nix] use gfortran.cc.lib
Przemek Kaminski [Fri, 7 Feb 2020 07:41:40 +0000 (08:41 +0100)]
[nix] use gfortran.cc.lib

4 years ago[INIT] add main folders.
Alexandre Delanoë [Thu, 6 Feb 2020 19:15:15 +0000 (20:15 +0100)]
[INIT] add main folders.

4 years agoMerge branch 'dev' into dev-getting-started-readme
Przemek Kaminski [Thu, 6 Feb 2020 10:24:14 +0000 (11:24 +0100)]
Merge branch 'dev' into dev-getting-started-readme

4 years ago[DOC] preparing maxClique phylo
Alexandre Delanoë [Wed, 5 Feb 2020 21:35:14 +0000 (22:35 +0100)]
[DOC] preparing maxClique phylo

4 years ago[API][GRAPH] cosmetics to prepare next step.
Alexandre Delanoë [Wed, 5 Feb 2020 21:28:49 +0000 (22:28 +0100)]
[API][GRAPH] cosmetics to prepare next step.

4 years ago[Node] add "charts" in JSONField
Przemek Kaminski [Wed, 5 Feb 2020 11:59:38 +0000 (12:59 +0100)]
[Node] add "charts" in JSONField

This is to save charts in dashboard.

4 years ago[API][CLEAN] cosmetics.
Alexandre Delanoë [Mon, 3 Feb 2020 16:21:20 +0000 (17:21 +0100)]
[API][CLEAN] cosmetics.

4 years ago[FEAT][FIX] Export hash, sort needed.
Alexandre Delanoë [Mon, 3 Feb 2020 15:13:14 +0000 (16:13 +0100)]
[FEAT][FIX] Export hash, sort needed.

4 years ago[FEAT] Export with Hash (Tree inspired from Merkle Tree).
Alexandre Delanoë [Mon, 3 Feb 2020 14:59:57 +0000 (15:59 +0100)]
[FEAT] Export with Hash (Tree inspired from Merkle Tree).

4 years ago[FEAT] Export Corpus with Document with Ngrams.
Alexandre Delanoë [Mon, 3 Feb 2020 14:20:38 +0000 (15:20 +0100)]
[FEAT] Export Corpus with Document with Ngrams.

4 years ago[DB][OPTIM] index (wip).
Alexandre Delanoë [Sat, 1 Feb 2020 18:28:39 +0000 (19:28 +0100)]
[DB][OPTIM] index (wip).

4 years ago[API][DB] Pairing tools: get pairs and pairWith.
Alexandre Delanoë [Fri, 31 Jan 2020 14:35:52 +0000 (15:35 +0100)]
[API][DB] Pairing tools: get pairs and pairWith.

4 years ago[API][PAIRING] adding route to pair a corpus with an annuaire (need to note this...
Alexandre Delanoë [Fri, 31 Jan 2020 09:21:44 +0000 (10:21 +0100)]
[API][PAIRING] adding route to pair a corpus with an annuaire (need to note this in db)

4 years ago[API][Pairs] search enabled again.
Alexandre Delanoë [Thu, 30 Jan 2020 22:18:13 +0000 (23:18 +0100)]
[API][Pairs] search enabled again.

4 years ago[FEAT] Enabling again: Pairs CorpusId AnnuaireId (unoptimized for now).
Alexandre Delanoë [Thu, 30 Jan 2020 17:56:43 +0000 (18:56 +0100)]
[FEAT] Enabling again: Pairs CorpusId AnnuaireId (unoptimized for now).

4 years agoMerge remote-tracking branch 'origin/dev-sql-run-insert-deprecation-fix' into dev...
Alexandre Delanoë [Thu, 30 Jan 2020 10:07:39 +0000 (11:07 +0100)]
Merge remote-tracking branch 'origin/dev-sql-run-insert-deprecation-fix' into dev-merge

4 years ago[DB] runInsertMany is deprecated, using runInsert_
Przemek Kaminski [Thu, 30 Jan 2020 09:45:32 +0000 (10:45 +0100)]
[DB] runInsertMany is deprecated, using runInsert_

4 years ago[README] stack --docker
Przemek Kaminski [Thu, 30 Jan 2020 09:44:54 +0000 (10:44 +0100)]
[README] stack --docker

4 years ago[BOARD] enabling it in the Tree + cosmetics.
Alexandre Delanoë [Thu, 30 Jan 2020 09:44:38 +0000 (10:44 +0100)]
[BOARD] enabling it in the Tree + cosmetics.

4 years ago[README] getting started updates, added .nix files, docker fixes
Przemek Kaminski [Thu, 30 Jan 2020 08:51:34 +0000 (09:51 +0100)]
[README] getting started updates, added .nix files, docker fixes

4 years ago[Hyperdata] Folder == Corpus for now.
Alexandre Delanoë [Tue, 28 Jan 2020 10:08:49 +0000 (11:08 +0100)]
[Hyperdata] Folder == Corpus for now.

4 years ago[FIX] Lang to upload + instances
Alexandre Delanoë [Mon, 27 Jan 2020 18:08:53 +0000 (19:08 +0100)]
[FIX] Lang to upload + instances

4 years ago[UPLOAD] 2 others file format
Alexandre Delanoë [Mon, 27 Jan 2020 14:27:41 +0000 (15:27 +0100)]
[UPLOAD] 2 others file format