cabal-version:      3.0
name:               literate-phylomemy
maintainer:         mailto:literate-phylomemy@sourcephile.fr
bug-reports:
  https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M/issues

homepage:
  https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M

author:             Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
copyright:          Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
license:            AGPL-3.0-or-later
license-file:       LICENSES/AGPL-3.0-or-later.txt

-- PVP:             +-+------- breaking API changes
--                  | | +----- non-breaking API additions
--                  | | | +--- code changes with no API change
version:            0.0.0.20240619
stability:          experimental
category:           Data mining
synopsis:           Phylomemetic network algorithms
description:
  A phylomemetic network (or phylomemy) is an adaptation
  of the concept of the phylogenetic tree,
  combined with Richard Dawkins' intuition of a meme,
  to describe the complex dynamic structure of transformation of relations between terms.

  Based upon:

  * Chavalarias D, Cointet J-P (2013) Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields. PLoS ONE 8(2): e54847. <https://doi.org/10.1371/journal.pone.0054847>

  * Chavalarias, D., Lobbé, Q., Delanoë, A., 2021. Draw me Science: Multi-level and multi-scale reconstruction of knowledge dynamics with phylomemies. Scientometrics. <https://doi.org/10.1007/s11192-021-04186-5>

build-type:         Simple
tested-with:        GHC ==9.6.5
extra-doc-files:
  ChangeLog.md
  Readme.md

extra-source-files:
  tests/Clustering/FrequentItemSet/BruteForce/associationRules/TakeakiUno.golden

extra-tmp-files:

source-repository head
  type:     git
  location:
    https://radicle-mermet.sourcephile.fr/z2364hmzZUAGy1nKdSFa1gLSoUE2M.git

source-repository head
  type:     rad
  location: rad://z2364hmzZUAGy1nKdSFa1gLSoUE2M

common boilerplate
  default-language:   Haskell2010
  default-extensions:
    BlockArguments
    DefaultSignatures
    DeriveGeneric
    DerivingStrategies
    FlexibleContexts
    FlexibleInstances
    GeneralizedNewtypeDeriving
    ImportQualifiedPost
    LambdaCase
    MultiParamTypeClasses
    NamedFieldPuns
    NoImplicitPrelude
    PatternSynonyms
    RecordWildCards
    RoleAnnotations
    ScopedTypeVariables
    TupleSections
    TypeApplications
    TypeFamilies
    TypeOperators
    ViewPatterns

  ghc-options:
    -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates
    -Wpartial-fields -fprint-potential-instances

common library-deps
  build-depends:
    , base                  >=4.10 && <5
    , bytestring
    , containers
    , deepseq
    , hashable
    , logic
    , random
    , safe-decimal
    , scientific
    , text
    , text-short
    , time
    , transformers
    , unordered-containers
    , validity
    , validity-containers
    , validity-time
    , vector

library
  import:          boilerplate, library-deps
  hs-source-dirs:  src
  exposed-modules:
    Clustering.FrequentItemSet.BruteForce
    Clustering.FrequentItemSet.References
    Numeric.Probability
    Phylomemy
    Phylomemy.Indexation
    Phylomemy.References
    Phylomemy.Similarity
    Phylomemy.TemporalMatching

  build-depends:   base >=4.10 && <5

test-suite literate-phylomemy-tests
  import:          boilerplate, library-deps
  type:            exitcode-stdio-1.0
  hs-source-dirs:  tests
  main-is:         Spec.hs

  -- build-tool-depends: sydtest-discover:sydtest-discover
  ghc-options:     -threaded -rtsopts -with-rtsopts=-N
  other-modules:
    Clustering.FrequentItemSet.BruteForceSpec
    Paths_literate_phylomemy
    Phylomemy.IndexationSpec
    Phylomemy.SimilaritySpec
    Utils

  autogen-modules: Paths_literate_phylomemy
  build-depends:
    , filepath
    , genvalidity
    , genvalidity-containers
    , genvalidity-sydtest
    , genvalidity-text
    , genvalidity-time
    , literate-phylomemy
    , relude
    , sydtest
    , validity
    , validity-containers
    , validity-text