bin/gargantext-cli/Main.hs

   1 {-|
   2 Module      : Main.hs
   3 Description : Gargantext starter
   4 Copyright   : (c) CNRS, 2017-Present
   5 License     : AGPL + CECILL v3
   6 Maintainer  : team@gargantext.org
   7 Stability   : experimental
   8 Portability : POSIX
   9
  10 Main specifications to index a corpus with a term list
  11
  12  -}
  13
  14 {-# LANGUAGE StandaloneDeriving #-}
  15 {-# LANGUAGE TypeOperators      #-}
  16 {-# LANGUAGE Strict             #-}
  17
  18 module Main where
  19
  20 import Control.Concurrent.Async as CCA (mapConcurrently)
  21 import Control.Concurrent (getNumCapabilities, myThreadId, threadCapability)
  22 import Control.Monad (zipWithM)
  23 import Control.Monad.IO.Class
  24 import Data.Aeson
  25 import Data.ByteString.Lazy (writeFile)
  26 import Data.Either (Either(..))
  27 import Data.List (cycle, concat, unwords)
  28 import Data.List.Split (chunksOf)
  29 import Data.Map (Map)
  30 import qualified Data.Map    as DM
  31 import Data.Text (pack, Text)
  32 import qualified Data.Text as DT
  33 import Data.Tuple.Extra (both)
  34 import qualified Data.Vector as DV
  35 import GHC.Generics
  36 import System.IO (hPutStr, hFlush, stderr)
  37 import System.Environment
  38
  39 import Gargantext.Prelude
  40 import Gargantext.Core
  41 import Gargantext.Core.Types
  42 import Gargantext.Core.Text.Terms
  43 import Gargantext.Core.Text.Context
  44 import Gargantext.Core.Text.Terms.WithList
  45 import Gargantext.Core.Text.Corpus.Parsers.CSV (readFile, csv_title, csv_abstract, csv_publication_year, unIntOrDec, fromMIntOrDec, defaultYear)
  46 import Gargantext.Core.Text.List.Formats.CSV (csvMapTermList)
  47 import Gargantext.Core.Text.Terms (terms)
  48 import Gargantext.Core.Text.Metrics.Count (coocOnContexts, Coocs)
  49
  50 ------------------------------------------------------------------------
  51 -- OUTPUT format
  52
  53 data CoocByYear = CoocByYear { year         :: Int
  54                              , nbContexts   :: NbContexts
  55                              , coocurrences :: Map (Text, Text) Coocs
  56                              } deriving (Show, Generic)
  57
  58 data CoocByYears = CoocByYears { years :: [CoocByYear] }
  59   deriving (Show, Generic)
  60
  61 type NbContexts = Int
  62
  63 instance ToJSON CoocByYear
  64 instance ToJSON CoocByYears
  65 ------------------------------------------------------------------------
  66
  67 filterTermsAndCooc
  68   :: Patterns
  69      -> (Int, [Text])
  70      -> IO CoocByYear -- (Int, (Map (Text, Text) Coocs))
  71 filterTermsAndCooc patterns (year, ts) = do
  72   log "start"
  73   r <- coocOnContexts identity <$> mapM (\x -> {-log "work" >>-} terms' patterns x) ts
  74   log "stop"
  75   pure $ CoocByYear year (length ts) (DM.mapKeys (both DT.unwords) r)
  76   where
  77
  78     log m = do
  79       tid    <- myThreadId
  80       (p, _) <- threadCapability tid
  81       putStrLn . unwords $
  82         ["filterTermsAndCooc:", m, show year, "on proc", show p]
  83
  84 main :: IO ()
  85 main = do
  86   [corpusFile, termListFile, outputFile] <- getArgs
  87
  88   --corpus :: IO (DM.IntMap [[Text]])
  89   eCorpusFile <- readFile corpusFile
  90   case eCorpusFile of
  91     Right cf -> do
  92       let corpus = DM.fromListWith (<>)
  93                    . DV.toList
  94                    . DV.map (\n -> (fromMIntOrDec defaultYear $ csv_publication_year n, [(csv_title n) <> " " <> (csv_abstract n)]))
  95                    . snd $ cf
  96
  97       -- termListMap :: [Text]
  98       termList <- csvMapTermList termListFile
  99
 100       putStrLn $ show $ length termList
 101
 102       let patterns = buildPatterns termList
 103
 104       -- r <- mapConcurrentlyChunked (filterTermsAndCooc patterns) (DM.toList corpus)
 105       r <-  mapConcurrently (filterTermsAndCooc patterns) (DM.toList corpus)
 106       writeFile outputFile $ encode (CoocByYears r)
 107     Left e -> panic $ "Error: " <> (pack e)
 108
 109
 110
 111 ------------------------------------------------------------------------
 112 -- | Tools
 113 mapMP :: MonadIO m => (a -> m b) -> [a] -> m [b]
 114 mapMP f xs = do
 115     bs <- zipWithM g (cycle "-\\|/") xs
 116     liftIO $ hPutStr stderr "\rDone\n"
 117     pure bs
 118   where
 119     g c x = do
 120       liftIO $ hPutStr stderr ['\r',c]
 121       liftIO $ hFlush  stderr
 122       f x
 123
 124 -- | Optimi that need further developments (not used yet)
 125 mapConcurrentlyChunked :: (a -> IO b) -> [a] -> IO [b]
 126 mapConcurrentlyChunked f ts = do
 127   caps <- getNumCapabilities
 128   let n = 1 `max` (length ts `div` caps)
 129   concat <$> mapConcurrently (mapM f) (chunksOf n ts)
 130
 131
 132 --terms' :: Patterns -> Text -> Corpus [[Text]]
 133 terms' pats txt = pure $ concat $ extractTermsWithList pats txt
 134
 135
 136 -- | TODO Minimal Example
 137 --testCooc = do
 138 --  let patterns = buildPatterns testTermList
 139 --  mapM (\x -> {-log "work" >>-} terms' patterns x) $ catMaybes $ map (head . snd) testCorpus
 140 --  --mapConcurrently (filterTermsAndCooc patterns) testCorpus
 141
 142
 143 testCorpus :: [(Int, [Text])]
 144 testCorpus = [ (1998, [pack "The beees"])
 145              , (1999, [ pack "The bees and the flowers"
 146                       --, pack "The bees and the flowers"
 147                       ])
 148              ]
 149
 150 testTermList :: TermList
 151 testTermList = [ ([pack "bee"], [[pack "bees"]])
 152                , ([pack "flower"], [[pack "flowers"]])
 153                ]
 154