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[PHYLO] first draft for types.
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1 {-|
2 Module : Gargantext.Types.Nodes
3 Description : Main Types of Nodes
4 Copyright : (c) CNRS, 2017-Present
5 License : AGPL + CECILL v3
6 Maintainer : team@gargantext.org
7 Stability : experimental
8 Portability : POSIX
9
10 -}
11
12 {-# OPTIONS_GHC -fno-warn-orphans #-}
13 {-# LANGUAGE DeriveGeneric #-}
14 {-# LANGUAGE TemplateHaskell #-}
15 {-# LANGUAGE OverloadedStrings #-}
16 {-# LANGUAGE FlexibleInstances #-}
17 -- {-# LANGUAGE DuplicateRecordFields #-}
18
19 module Gargantext.Types.Node where
20
21 import Prelude (Enum, Bounded, minBound, maxBound)
22
23 import GHC.Generics (Generic)
24
25 import Control.Lens hiding (elements)
26 import qualified Control.Lens as L
27 import Control.Applicative ((<*>))
28
29 import Data.Aeson
30 import Data.Aeson (Value(),toJSON)
31 import Data.Aeson.TH (deriveJSON)
32 import Data.ByteString.Lazy (ByteString)
33 import Data.Either
34 import Data.Eq (Eq)
35 import Data.Text (Text, unpack)
36 import Data.Time (UTCTime)
37 import Data.Time.Segment (jour, timesAfter, Granularity(D))
38 import Data.Swagger
39
40 import Text.Read (read)
41 import Text.Show (Show())
42
43 import Servant
44
45 import Test.QuickCheck.Arbitrary
46 import Test.QuickCheck (elements)
47
48 import Gargantext.Prelude
49 import Gargantext.Utils.Prefix (unPrefix)
50
51 ------------------------------------------------------------------------
52
53 type UTCTime' = UTCTime
54
55 instance Arbitrary UTCTime' where
56 arbitrary = elements $ timesAfter 100 D (jour 2000 01 01)
57
58
59
60 ------------------------------------------------------------------------
61 data Status = Status { status_failed :: Int
62 , status_succeeded :: Int
63 , status_remaining :: Int
64 } deriving (Show, Generic)
65 $(deriveJSON (unPrefix "status_") ''Status)
66
67 instance Arbitrary Status where
68 arbitrary = Status <$> arbitrary <*> arbitrary <*> arbitrary
69
70 ------------------------------------------------------------------------
71 data HyperdataDocument = HyperdataDocument { hyperdataDocument_bdd :: Maybe Text
72 , hyperdataDocument_doi :: Maybe Text
73 , hyperdataDocument_url :: Maybe Text
74 , hyperdataDocument_page :: Maybe Int
75 , hyperdataDocument_title :: Maybe Text
76 , hyperdataDocument_authors :: Maybe Text
77 , hyperdataDocument_source :: Maybe Text
78 , hyperdataDocument_abstract :: Maybe Text
79 , hyperdataDocument_statuses :: Maybe [Status]
80 , hyperdataDocument_publication_date :: Maybe Text
81 , hyperdataDocument_publication_year :: Maybe Int
82 , hyperdataDocument_publication_month :: Maybe Int
83 , hyperdataDocument_publication_hour :: Maybe Int
84 , hyperdataDocument_publication_minute :: Maybe Int
85 , hyperdataDocument_publication_second :: Maybe Int
86 , hyperdataDocument_languageIso2 :: Maybe Text
87 } deriving (Show, Generic)
88 $(deriveJSON (unPrefix "hyperdataDocument_") ''HyperdataDocument)
89
90 toHyperdataDocuments :: [(Text, Text)] -> [HyperdataDocument]
91 toHyperdataDocuments ts = map (\(t1,t2) -> HyperdataDocument Nothing Nothing Nothing Nothing (Just t1)
92 Nothing (Just t2) Nothing Nothing Nothing
93 Nothing Nothing Nothing Nothing Nothing Nothing
94 ) ts
95
96 hyperdataDocuments :: [HyperdataDocument]
97 hyperdataDocuments = toHyperdataDocuments [ ("AI is big but less than crypto", "Troll System journal")
98 , ("Crypto is big but less than AI", "System Troll review" )
99 , ("Science is magic" , "Closed Source review")
100 , ("Open science for all" , "No Time" )
101 , ("Closed science for me" , "No Space" )
102 ]
103
104
105 instance Arbitrary HyperdataDocument where
106 arbitrary = elements hyperdataDocuments
107
108 ------------------------------------------------------------------------
109 data LanguageNodes = LanguageNodes { languageNodes___unknown__ :: [Int]}
110 deriving (Show, Generic)
111 $(deriveJSON (unPrefix "languageNodes_") ''LanguageNodes)
112
113 ------------------------------------------------------------------------
114 -- level: debug | dev (fatal = critical)
115 data EventLevel = CRITICAL | FATAL | ERROR | WARNING | INFO | DEBUG
116 deriving (Show, Generic, Enum, Bounded)
117
118 instance FromJSON EventLevel
119 instance ToJSON EventLevel
120
121 instance Arbitrary EventLevel where
122 arbitrary = elements [minBound..maxBound]
123
124 ------------------------------------------------------------------------
125
126 data Event = Event { event_level :: EventLevel
127 , event_message :: Text
128 , event_date :: UTCTime
129 } deriving (Show, Generic)
130 $(deriveJSON (unPrefix "event_") ''Event)
131
132 instance Arbitrary Event where
133 arbitrary = Event <$> arbitrary <*> arbitrary <*> arbitrary
134
135 ------------------------------------------------------------------------
136
137 type Text' = Text
138
139 instance Arbitrary Text' where
140 arbitrary = elements ["ici", "la"]
141
142 data Resource = Resource { resource_path :: Maybe Text
143 , resource_scraper :: Maybe Text
144 , resource_query :: Maybe Text
145 , resource_events :: [Event]
146 , resource_status :: Status
147 , resource_date :: UTCTime'
148 } deriving (Show, Generic)
149 $(deriveJSON (unPrefix "resource_") ''Resource)
150
151 instance Arbitrary Resource where
152 arbitrary = Resource <$> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary
153
154 ------------------------------------------------------------------------
155
156 data HyperdataCorpus = HyperdataCorpus { hyperdataCorpus_resources :: [Resource]
157 } deriving (Show, Generic)
158 $(deriveJSON (unPrefix "hyperdataCorpus_") ''HyperdataCorpus)
159
160
161 data HyperdataUser = HyperdataUser { hyperdataUser_language :: Maybe Text
162 } deriving (Show, Generic)
163 $(deriveJSON (unPrefix "hyperdataUser_") ''HyperdataUser)
164
165 -- Preferences ?
166
167 data HyperdataFolder = HyperdataFolder { hyperdataFolder_preferences :: Maybe Text
168 } deriving (Show, Generic)
169 $(deriveJSON (unPrefix "hyperdataFolder_") ''HyperdataFolder)
170
171
172 data HyperdataProject = HyperdataProject { hyperdataProject_preferences :: Maybe Text
173 } deriving (Show, Generic)
174 $(deriveJSON (unPrefix "hyperdataProject_") ''HyperdataProject)
175
176
177
178 data HyperdataList = HyperdataList { hyperdataList_preferences :: Maybe Text
179 } deriving (Show, Generic)
180 $(deriveJSON (unPrefix "hyperdataList_") ''HyperdataList)
181
182 data HyperdataScore = HyperdataScore { hyperdataScore_preferences :: Maybe Text
183 } deriving (Show, Generic)
184 $(deriveJSON (unPrefix "hyperdataScore_") ''HyperdataScore)
185
186
187
188 data HyperdataFavorites = HyperdataFavorites { hyperdataFavorites_preferences :: Maybe Text
189 } deriving (Show, Generic)
190 $(deriveJSON (unPrefix "hyperdataFavorites_") ''HyperdataFavorites)
191
192 data HyperdataResource = HyperdataResource { hyperdataResource_preferences :: Maybe Text
193 } deriving (Show, Generic)
194 $(deriveJSON (unPrefix "hyperdataResource_") ''HyperdataResource)
195
196
197
198 -- TODO add the Graph Structure here
199 data HyperdataGraph = HyperdataGraph { hyperdataGraph_preferences :: Maybe Text
200 } deriving (Show, Generic)
201 $(deriveJSON (unPrefix "hyperdataGraph_") ''HyperdataGraph)
202
203
204 -- TODO add the Graph Structure here
205 data HyperdataPhylo = HyperdataPhylo { hyperdataPhylo_preferences :: Maybe Text
206 } deriving (Show, Generic)
207 $(deriveJSON (unPrefix "hyperdataPhylo_") ''HyperdataPhylo)
208
209 -- | TODO FEATURE: Notebook saved in the node (to work with Python or Haskell)
210 data HyperdataNotebook = HyperdataNotebook { hyperdataNotebook_preferences :: Maybe Text
211 } deriving (Show, Generic)
212 $(deriveJSON (unPrefix "hyperdataNotebook_") ''HyperdataNotebook)
213
214
215
216 -- | NodePoly indicates that Node has a Polymorphism Type
217 type Node json = NodePoly NodeId NodeTypeId NodeUserId (Maybe NodeParentId) NodeName UTCTime json -- NodeVector
218
219 -- type Node json = NodePoly NodeId NodeTypeId UserId ParentId NodeName UTCTime json
220 type NodeTypeId = Int
221 type NodeId = Int
222 type NodeParentId = Int
223 type NodeUserId = Int
224 type NodeName = Text
225 --type NodeVector = Vector
226
227 --type NodeUser = Node HyperdataUser
228
229 -- | Then a Node can be either a Folder or a Corpus or a Document
230 type NodeUser = Node HyperdataUser
231 type Folder = Node HyperdataFolder
232 type Project = Folder -- NP Node HyperdataProject ?
233 type Corpus = Node HyperdataCorpus
234 type Document = Node HyperdataDocument
235
236 ------------------------------------------------------------------------
237 data NodeType = NodeUser | Project | Corpus | Document | DocumentCopy
238 | Classification
239 | Lists
240 | Metrics | Occurrences
241 deriving (Show, Read, Eq, Generic)
242
243 instance FromJSON NodeType
244 instance ToJSON NodeType
245
246 instance FromHttpApiData NodeType
247 where
248 parseUrlPiece = Right . read . unpack
249
250 instance ToParamSchema NodeType
251 instance ToSchema NodeType
252
253 ------------------------------------------------------------------------
254 data NodePoly id typename userId parentId name date hyperdata = Node { node_id :: id
255 , node_typename :: typename
256 , node_userId :: userId
257 -- , nodeHashId :: hashId
258 , node_parentId :: parentId
259 , node_name :: name
260 , node_date :: date
261 , node_hyperdata :: hyperdata
262 -- , node_titleAbstract :: titleAbstract
263 } deriving (Show, Generic)
264 $(deriveJSON (unPrefix "node_") ''NodePoly)
265
266 instance Arbitrary (NodePoly NodeId NodeTypeId (Maybe NodeUserId) NodeParentId NodeName UTCTime Value) where
267 arbitrary = elements [Node 1 1 (Just 1) 1 "name" (jour 2018 01 01) (toJSON ("{}"::Text))]
268
269
270 instance Arbitrary (NodePoly NodeId NodeTypeId NodeUserId (Maybe NodeParentId) NodeName UTCTime Value) where
271 arbitrary = elements [Node 1 1 1 (Just 1) "name" (jour 2018 01 01) (toJSON ("{}"::Text))]
272
273 instance Arbitrary (NodePoly NodeId NodeTypeId (Maybe NodeUserId) NodeParentId NodeName UTCTime HyperdataDocument) where
274 arbitrary = elements [Node 1 1 (Just 1) 1 "name" (jour 2018 01 01) ((hyperdataDocument))]
275
276
277 instance Arbitrary (NodePoly NodeId NodeTypeId NodeUserId (Maybe NodeParentId) NodeName UTCTime HyperdataDocument) where
278 arbitrary = elements [Node 1 1 1 (Just 1) "name" (jour 2018 01 01) hyperdataDocument]
279
280
281 ------------------------------------------------------------------------
282 hyperdataDocument :: HyperdataDocument
283 hyperdataDocument = case decode docExample of
284 Just hp -> hp
285 Nothing -> HyperdataDocument Nothing Nothing Nothing Nothing
286 Nothing Nothing Nothing Nothing
287 Nothing Nothing Nothing Nothing
288 Nothing Nothing Nothing Nothing
289 docExample :: ByteString
290 docExample = "{\"publication_day\":6,\"language_iso2\":\"en\",\"publication_minute\":0,\"publication_month\":7,\"language_iso3\":\"eng\",\"publication_second\":0,\"authors\":\"Nils Hovdenak, Kjell Haram\",\"publication_year\":2012,\"publication_date\":\"2012-07-06 00:00:00+00:00\",\"language_name\":\"English\",\"statuses\":[],\"realdate_full_\":\"2012 01 12\",\"source\":\"European journal of obstetrics, gynecology, and reproductive biology\",\"abstract\":\"The literature was searched for publications on minerals and vitamins during pregnancy and the possible influence of supplements on pregnancy outcome.\",\"title\":\"Influence of mineral and vitamin supplements on pregnancy outcome.\",\"publication_hour\":0}"
291
292
293 instance ToSchema HyperdataDocument where
294 declareNamedSchema proxy = genericDeclareNamedSchema defaultSchemaOptions proxy
295 L.& mapped.schema.description ?~ "a document"
296 L.& mapped.schema.example ?~ toJSON hyperdataDocument
297
298
299 instance ToSchema (NodePoly NodeId NodeTypeId NodeUserId
300 (Maybe NodeParentId) NodeName
301 UTCTime HyperdataDocument
302 )
303
304 instance ToSchema (NodePoly NodeId NodeTypeId
305 (Maybe NodeUserId)
306 NodeParentId NodeName
307 UTCTime HyperdataDocument
308 )
309
310 instance ToSchema Status
311
312