]> Git — Sourcephile - gargantext.git/blob - src/Gargantext/API/Node/Update.hs
[pubmed] implement per-user api keys
[gargantext.git] / src / Gargantext / API / Node / Update.hs
1 {-|
2 Module : Gargantext.API.Node.Update
3 Description :
4 Copyright : (c) CNRS, 2017-Present
5 License : AGPL + CECILL v3
6 Maintainer : team@gargantext.org
7 Stability : experimental
8 Portability : POSIX
9
10 -}
11
12 {-# LANGUAGE TemplateHaskell #-}
13 {-# LANGUAGE TypeOperators #-}
14 {-# OPTIONS_GHC -fno-warn-orphans #-}
15
16 module Gargantext.API.Node.Update
17 where
18
19 import Control.Lens (view)
20 import Data.Aeson
21 import Data.Maybe (Maybe(..), fromMaybe)
22 import Data.Swagger
23 import GHC.Generics (Generic)
24 import Gargantext.API.Admin.EnvTypes (GargJob(..), Env)
25 import Gargantext.API.Admin.Orchestrator.Types (JobLog(..), AsyncJobs)
26 import Gargantext.API.Admin.Types (HasSettings)
27 import Gargantext.API.Ngrams.List (reIndexWith)
28 --import Gargantext.API.Ngrams.Types (TabType(..))
29 import Gargantext.API.Prelude (GargM, GargError, simuLogs)
30 import Gargantext.Core.Methods.Similarities (GraphMetric(..))
31 import Gargantext.Core.Types.Main (ListType(..))
32 import Gargantext.Core.Viz.Graph.API (recomputeGraph)
33 import Gargantext.Core.Viz.Graph.Tools (PartitionMethod(..), BridgenessMethod(..))
34 import Gargantext.Core.Viz.Graph.Types (Strength)
35 import Gargantext.Core.Viz.Phylo (PhyloSubConfig(..), subConfig2config)
36 import Gargantext.Core.Viz.Phylo.API.Tools (flowPhyloAPI)
37 import Gargantext.Database.Action.Flow.Pairing (pairing)
38 import Gargantext.Database.Action.Flow.Types (FlowCmdM)
39 import Gargantext.Database.Action.Metrics (updateNgramsOccurrences, updateContextScore)
40 import Gargantext.Database.Admin.Types.Hyperdata
41 import Gargantext.Database.Admin.Types.Node
42 import Gargantext.Database.Query.Table.Node (defaultList, getNode)
43 import Gargantext.Database.Query.Table.Node.UpdateOpaleye (updateHyperdata)
44 import Gargantext.Database.Schema.Ngrams (NgramsType(NgramsTerms))
45 import Gargantext.Database.Schema.Node (node_parent_id)
46 import Gargantext.Prelude (Bool(..), Ord, Eq, (<$>), ($), {-printDebug,-} pure, show, cs, (<>), panic, (<*>))
47 import Gargantext.Utils.Jobs (serveJobsAPI, MonadJobStatus(..))
48 import Prelude (Enum, Bounded, minBound, maxBound)
49 import Servant
50 import Test.QuickCheck (elements)
51 import Test.QuickCheck.Arbitrary
52 import qualified Data.Set as Set
53 import qualified Gargantext.API.Metrics as Metrics
54 import qualified Gargantext.API.Ngrams.Types as NgramsTypes
55 import qualified Gargantext.Utils.Aeson as GUA
56
57 ------------------------------------------------------------------------
58 type API = Summary " Update node according to NodeType params"
59 :> AsyncJobs JobLog '[JSON] UpdateNodeParams JobLog
60
61 ------------------------------------------------------------------------
62 data UpdateNodeParams = UpdateNodeParamsList { methodList :: !Method }
63
64 | UpdateNodeParamsGraph { methodGraphMetric :: !GraphMetric
65 , methodGraphClustering :: !PartitionMethod
66 , methodGraphBridgeness :: !BridgenessMethod
67 , methodGraphEdgesStrength :: !Strength
68 , methodGraphNodeType1 :: !NgramsType
69 , methodGraphNodeType2 :: !NgramsType
70 }
71
72 | UpdateNodeParamsTexts { methodTexts :: !Granularity }
73
74 | UpdateNodeParamsBoard { methodBoard :: !Charts }
75
76 | LinkNodeReq { nodeType :: !NodeType
77 , id :: !NodeId }
78
79 | UpdateNodePhylo { config :: !PhyloSubConfig }
80 deriving (Generic)
81
82 ----------------------------------------------------------------------
83 data Method = Basic | Advanced | WithModel
84 deriving (Generic, Eq, Ord, Enum, Bounded)
85
86 ----------------------------------------------------------------------
87 data Granularity = NewNgrams | NewTexts | Both
88 deriving (Generic, Eq, Ord, Enum, Bounded)
89
90 ----------------------------------------------------------------------
91 data Charts = Sources | Authors | Institutes | Ngrams | All
92 deriving (Generic, Eq, Ord, Enum, Bounded)
93
94 ------------------------------------------------------------------------
95 api :: UserId -> NodeId -> ServerT API (GargM Env GargError)
96 api uId nId =
97 serveJobsAPI UpdateNodeJob $ \jHandle p ->
98 updateNode uId nId p jHandle
99
100 updateNode :: (HasSettings env, FlowCmdM env err m, MonadJobStatus m)
101 => UserId
102 -> NodeId
103 -> UpdateNodeParams
104 -> JobHandle m
105 -> m ()
106 updateNode uId nId (UpdateNodeParamsGraph metric partitionMethod bridgeMethod strength nt1 nt2) jobHandle = do
107
108 markStarted 2 jobHandle
109 -- printDebug "Computing graph: " method
110 _ <- recomputeGraph uId nId partitionMethod bridgeMethod (Just metric) (Just strength) nt1 nt2 True
111 -- printDebug "Graph computed: " method
112 markComplete jobHandle
113
114 updateNode _uId nid1 (LinkNodeReq nt nid2) jobHandle = do
115 markStarted 2 jobHandle
116 _ <- case nt of
117 NodeAnnuaire -> pairing nid2 nid1 Nothing -- defaultList
118 NodeCorpus -> pairing nid1 nid2 Nothing -- defaultList
119 _ -> panic $ "[G.API.N.Update.updateNode] NodeType not implemented"
120 <> cs (show nt <> " nid1: " <> show nid1 <> " nid2: " <> show nid2)
121
122 markComplete jobHandle
123
124 -- | `Advanced` to update graphs
125 updateNode _uId lId (UpdateNodeParamsList Advanced) jobHandle = do
126 markStarted 3 jobHandle
127 corpusId <- view node_parent_id <$> getNode lId
128
129 markProgress 1 jobHandle
130
131 _ <- case corpusId of
132 Just cId -> do
133 _ <- Metrics.updatePie cId (Just lId) NgramsTypes.Authors Nothing
134 _ <- Metrics.updateTree cId (Just lId) NgramsTypes.Institutes MapTerm
135 _ <- Metrics.updatePie cId (Just lId) NgramsTypes.Sources Nothing
136 pure ()
137 Nothing -> pure ()
138
139 markComplete jobHandle
140
141 updateNode _uId lId (UpdateNodeParamsList _mode) jobHandle = do
142 markStarted 3 jobHandle
143 corpusId <- view node_parent_id <$> getNode lId
144
145 markProgress 1 jobHandle
146
147 _ <- case corpusId of
148 Just cId -> do
149 _ <- reIndexWith cId lId NgramsTerms (Set.singleton MapTerm)
150 _ <- updateNgramsOccurrences cId (Just lId)
151 pure ()
152 Nothing -> pure ()
153
154 markComplete jobHandle
155
156 updateNode _userId phyloId (UpdateNodePhylo config) jobHandle = do
157 markStarted 3 jobHandle
158
159 corpusId' <- view node_parent_id <$> getNode phyloId
160
161 let corpusId = fromMaybe (panic "") corpusId'
162
163 phy <- flowPhyloAPI (subConfig2config config) corpusId
164
165 markProgress 1 jobHandle
166
167 _ <- updateHyperdata phyloId (HyperdataPhylo Nothing (Just phy))
168
169 markComplete jobHandle
170
171 updateNode _uId tId (UpdateNodeParamsTexts _mode) jobHandle = do
172 markStarted 3 jobHandle
173
174 corpusId <- view node_parent_id <$> getNode tId
175 lId <- defaultList $ fromMaybe (panic "[G.A.N.Update] updateNode/UpdateNodeParamsTexts: no defaultList") corpusId
176
177 markProgress 1 jobHandle
178
179 _ <- case corpusId of
180 Just cId -> do
181 _ <- reIndexWith cId lId NgramsTerms (Set.singleton MapTerm)
182 _ <- updateNgramsOccurrences cId (Just lId)
183 _ <- updateContextScore cId (Just lId)
184 _ <- Metrics.updateChart cId (Just lId) NgramsTypes.Docs Nothing
185 -- printDebug "updateContextsScore" (cId, lId, u)
186 pure ()
187 Nothing -> pure ()
188
189 markComplete jobHandle
190
191
192 updateNode _uId _nId _p jobHandle = do
193 simuLogs jobHandle 10
194
195 ------------------------------------------------------------------------
196 -- TODO unPrefix "pn_" FromJSON, ToJSON, ToSchema, adapt frontend.
197 instance FromJSON UpdateNodeParams where
198 parseJSON = genericParseJSON (defaultOptions { sumEncoding = GUA.defaultTaggedObject })
199
200 instance ToJSON UpdateNodeParams where
201 toJSON = genericToJSON (defaultOptions { sumEncoding = GUA.defaultTaggedObject })
202
203 instance ToSchema UpdateNodeParams
204 instance Arbitrary UpdateNodeParams where
205 arbitrary = do
206 l <- UpdateNodeParamsList <$> arbitrary
207 g <- UpdateNodeParamsGraph <$> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary <*> arbitrary
208 t <- UpdateNodeParamsTexts <$> arbitrary
209 b <- UpdateNodeParamsBoard <$> arbitrary
210 elements [l,g,t,b]
211
212 instance FromJSON Method
213 instance ToJSON Method
214 instance ToSchema Method
215 instance Arbitrary Method where
216 arbitrary = elements [ minBound .. maxBound ]
217
218 instance FromJSON Granularity
219 instance ToJSON Granularity
220 instance ToSchema Granularity
221 instance Arbitrary Granularity where
222 arbitrary = elements [ minBound .. maxBound ]
223
224 instance FromJSON Charts
225 instance ToJSON Charts
226 instance ToSchema Charts
227 instance Arbitrary Charts where
228 arbitrary = elements [ minBound .. maxBound ]
229
230 ------------------------------------------------------------------------