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Merge branch 'dev' into dev-phylo
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1 CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
2 CREATE EXTENSION IF NOT EXISTS tsm_system_rows;
3
4 COMMENT ON EXTENSION plpgsql IS 'PL/pgSQL procedural language';
5
6 -- CREATE USER WITH ...
7 -- createdb "gargandb"
8
9 CREATE TABLE public.auth_user (
10 id SERIAL,
11 password character varying(128) NOT NULL,
12 last_login timestamp with time zone,
13 is_superuser boolean NOT NULL,
14 username character varying(150) NOT NULL,
15 first_name character varying(30) NOT NULL,
16 last_name character varying(30) NOT NULL,
17 email character varying(254) NOT NULL,
18 is_staff boolean NOT NULL,
19 is_active boolean NOT NULL,
20 date_joined timestamp with time zone DEFAULT now() NOT NULL,
21 PRIMARY KEY (id)
22 );
23
24 ALTER TABLE public.auth_user OWNER TO gargantua;
25
26
27 -- TODO add publication_date
28 -- TODO typename -> type_id
29 CREATE TABLE public.nodes (
30 id SERIAL,
31 typename integer NOT NULL,
32 user_id integer NOT NULL,
33 parent_id integer REFERENCES public.nodes(id) ON DELETE CASCADE ,
34 name character varying(255) DEFAULT ''::character varying NOT NULL,
35 date timestamp with time zone DEFAULT now() NOT NULL,
36 hyperdata jsonb DEFAULT '{}'::jsonb NOT NULL,
37 search tsvector,
38 PRIMARY KEY (id),
39 FOREIGN KEY (user_id) REFERENCES public.auth_user(id) ON DELETE CASCADE
40 );
41 ALTER TABLE public.nodes OWNER TO gargantua;
42
43
44 CREATE TABLE public.ngrams (
45 id SERIAL,
46 terms character varying(255),
47 n integer,
48 PRIMARY KEY (id)
49 );
50 ALTER TABLE public.ngrams OWNER TO gargantua;
51
52 --------------------------------------------------------------
53 -- TODO: delete delete this table
54 --CREATE TABLE public.nodes_ngrams (
55 -- id SERIAL,
56 -- node_id integer NOT NULL,
57 -- ngrams_id integer NOT NULL,
58 -- parent_id integer REFERENCES public.nodes_ngrams(id) ON DELETE SET NULL,
59 -- ngrams_type integer,
60 -- list_type integer,
61 -- weight double precision,
62 -- FOREIGN KEY (node_id) REFERENCES public.nodes(id) ON DELETE CASCADE,
63 -- FOREIGN KEY (ngrams_id) REFERENCES public.ngrams(id) ON DELETE CASCADE,
64 -- PRIMARY KEY (id)
65 --);
66 --ALTER TABLE public.nodes_ngrams OWNER TO gargantua;
67 --------------------------------------------------------------
68
69 --------------------------------------------------------------
70 --
71 --
72 --CREATE TABLE public.nodes_ngrams_ngrams (
73 -- node_id integer NOT NULL REFERENCES public.nodes(id) ON DELETE CASCADE,
74 -- ngram1_id integer NOT NULL REFERENCES public.ngrams(id) ON DELETE CASCADE,
75 -- ngram2_id integer NOT NULL REFERENCES public.ngrams(id) ON DELETE CASCADE,
76 -- weight double precision,
77 -- PRIMARY KEY (node_id,ngram1_id,ngram2_id)
78 --);
79 --
80 --ALTER TABLE public.nodes_ngrams_ngrams OWNER TO gargantua;
81
82 ---------------------------------------------------------------
83 CREATE TABLE public.nodes_nodes (
84 node1_id integer NOT NULL REFERENCES public.nodes(id) ON DELETE CASCADE,
85 node2_id integer NOT NULL REFERENCES public.nodes(id) ON DELETE CASCADE,
86 score real,
87 category integer,
88 PRIMARY KEY (node1_id,node2_id)
89 );
90 ALTER TABLE public.nodes_nodes OWNER TO gargantua;
91
92 ---------------------------------------------------------------
93 -- TODO should reference "id" of nodes_nodes (instead of node1_id, node2_id)
94 CREATE TABLE public.node_node_ngrams (
95 id SERIAL,
96 node1_id INTEGER NOT NULL REFERENCES public.nodes (id) ON DELETE CASCADE,
97 node2_id INTEGER NOT NULL REFERENCES public.nodes (id) ON DELETE CASCADE,
98 ngrams_id INTEGER NOT NULL REFERENCES public.ngrams (id) ON DELETE CASCADE,
99 ngrams_type INTEGER,
100 weight double precision,
101 PRIMARY KEY (id)
102 );
103 ALTER TABLE public.node_node_ngrams OWNER TO gargantua;
104 --------------------------------------------------------------
105
106 --CREATE TABLE public.nodes_ngrams_repo (
107 -- version integer NOT NULL,
108 -- patches jsonb DEFAULT '{}'::jsonb NOT NULL,
109 -- PRIMARY KEY (version)
110 --);
111 --ALTER TABLE public.nodes_ngrams_repo OWNER TO gargantua;
112
113 ---------------------------------------------------------
114
115 -- If needed for rights management at row level
116 -- CREATE EXTENSION IF NOT EXISTS acl WITH SCHEMA public;
117
118 CREATE TABLE public.rights (
119 user_id INTEGER NOT NULL REFERENCES public.auth_user(id) ON DELETE CASCADE,
120 node_id INTEGER NOT NULL REFERENCES public.nodes(id) ON DELETE CASCADE,
121 rights INTEGER NOT NULL,
122 PRIMARY KEY (user_id, node_id)
123 );
124 ALTER TABLE public.rights OWNER TO gargantua;
125
126
127 ------------------------------------------------------------
128 -- INDEXES
129
130 CREATE INDEX ON public.auth_user USING btree (username varchar_pattern_ops);
131 CREATE UNIQUE INDEX ON public.auth_user USING btree (username);
132
133 CREATE INDEX ON public.rights USING btree (user_id,node_id);
134
135 CREATE INDEX ON public.nodes USING gin (hyperdata);
136 CREATE INDEX ON public.nodes USING btree (user_id, typename, parent_id);
137 CREATE UNIQUE INDEX ON public.nodes USING btree (((hyperdata ->> 'uniqId'::text)));
138 CREATE UNIQUE INDEX ON public.nodes USING btree (((hyperdata ->> 'uniqIdBdd'::text)));
139 CREATE UNIQUE INDEX ON public.nodes USING btree (typename, parent_id, ((hyperdata ->> 'uniqId'::text)));
140
141 CREATE UNIQUE INDEX ON public.ngrams (terms); -- TEST GIN
142
143 CREATE INDEX ON public.nodes_nodes USING btree (node1_id, node2_id, category);
144 CREATE UNIQUE INDEX ON public.nodes_nodes USING btree (node1_id, node2_id);
145
146 CREATE UNIQUE INDEX ON public.node_node_ngrams USING btree (node1_id, node2_id, ngrams_id, ngrams_type);
147 create INDEX on public.node_node_ngrams USING btree (node1_id, node2_id);
148
149 -- TRIGGERS
150 -- TODO user haskell-postgresql-simple to create this function
151 -- with rights typename
152 CREATE OR REPLACE FUNCTION public.search_update()
153 RETURNS trigger AS $$
154 begin
155 IF new.typename = 4 AND new.hyperdata @> '{"language_iso2":"EN"}' THEN
156 new.search := to_tsvector( 'english' , (new.hyperdata ->> 'title') || ' ' || (new.hyperdata ->> 'abstract'));
157
158 ELSIF new.typename = 4 AND new.hyperdata @> '{"language_iso2":"FR"}' THEN
159 new.search := to_tsvector( 'french' , (new.hyperdata ->> 'title') || ' ' || (new.hyperdata ->> 'abstract'));
160
161 ELSIF new.typename = 41 THEN
162 new.search := to_tsvector( 'french' , (new.hyperdata ->> 'prenom')
163 || ' ' || (new.hyperdata ->> 'nom')
164 || ' ' || (new.hyperdata ->> 'fonction')
165 );
166 ELSE
167 new.search := to_tsvector( 'english' , new.name);
168 END IF;
169 return new;
170 end
171 $$ LANGUAGE plpgsql;
172
173 ALTER FUNCTION public.search_update() OWNER TO gargantua;
174
175 CREATE TRIGGER search_update_trigger BEFORE INSERT OR UPDATE ON nodes FOR EACH ROW EXECUTE PROCEDURE search_update();
176
177 -- Ngrams Full DB Extraction Optim
178 -- TODO remove hard parameter
179 CREATE OR REPLACE function node_pos(int, int) returns bigint
180 AS 'SELECT count(id) from nodes
181 WHERE id < $1
182 AND typename = $2
183 '
184 LANGUAGE SQL immutable;
185
186 --drop index node_by_pos;
187 create index node_by_pos on nodes using btree(node_pos(id,typename));
188
189 -- Initialize index with already existing data
190 UPDATE nodes SET hyperdata = hyperdata;
191
192
193
194
195
196