src-test/Graph/Clustering.hs

   1
   2 {-|
   3 Module      : Graph.Clustering
   4 Description : Basic tests to avoid quick regression
   5 Copyright   : (c) CNRS, 2017-Present
   6 License     : AGPL + CECILL v3
   7 Maintainer  : team@gargantext.org
   8 Stability   : experimental
   9 Portability : POSIX
  10
  11 -}
  12
  13
  14 module Graph.Clustering where
  15
  16 import Gargantext.API.Ngrams.Types (NgramsTerm(..))
  17 import Gargantext.Core.Viz.Graph (Graph(..))
  18 import Gargantext.Core.Viz.Graph.Tools (doDistanceMap)
  19 import Gargantext.Core.Viz.Graph.Tools.IGraph (spinglass)
  20 import Gargantext.Prelude
  21 import Test.Hspec
  22 import Data.HashMap.Strict (HashMap)
  23 import qualified Data.HashMap.Strict as HashMap
  24 import qualified Data.List as List
  25 import Gargantext.Core.Viz.Graph.Tools (PartitionMethod(..))
  26 import Gargantext.Core.Viz.Graph.Tools.IGraph (spinglass)
  27 import Gargantext.Core.Methods.Distances (Distance(..))
  28
  29 myCooc :: HashMap (NgramsTerm, NgramsTerm) Int
  30 myCooc = HashMap.fromList [((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "sqrt"}),12),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "data"}),8),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "transverse momentum"}),6),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "gev au"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "rhic"}),13),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "sqrt"}),27),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "s"}),8),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "p"}),27),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "s"}),10),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),5),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "gev"}),9),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "transverse momentum"}),3),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "hadrons"}),4),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "gev"}),9),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "gev/c"}),3),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "nn"}),80),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "particle"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "p collisions"}),6),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "sqrt"}),88),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "gev/c"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "gev au"}),5),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "p_t"}),5),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "s_nn"}),12),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "p"}),21),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "sqrt"}),6),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "gev"}),12),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),8),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "rhic"}),3),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "eta"}),4),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "sqrt"}),9),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "particle"}),8),((NgramsTerm {unNgramsTerm = "au-au collisions"},NgramsTerm {unNgramsTerm = "sqrt"}),10),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "s_nn"}),12),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "particle"}),4),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "phenix experiment"}),4),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "nn"}),65),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "number"}),3),((NgramsTerm {unNgramsTerm = "p_t"},NgramsTerm {unNgramsTerm = "s_nn"}),11),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "not found"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "number"}),4),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "pi ^"}),7),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "spectra"}),3),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "s"}),9),((NgramsTerm {unNgramsTerm = "second part"},NgramsTerm {unNgramsTerm = "thesis"}),4),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "pi ^"}),5),((NgramsTerm {unNgramsTerm = "midrapidity"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "s_nn"}),13),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = "s_nn"}),5),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "number"}),4),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "s"}),8),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "p"}),6),((NgramsTerm {unNgramsTerm = "lambda"},NgramsTerm {unNgramsTerm = "rhic"}),4),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "pi ^"}),13),((NgramsTerm {unNgramsTerm = "lambda"},NgramsTerm {unNgramsTerm = "p"}),3),((NgramsTerm {unNgramsTerm = "gev au"},NgramsTerm {unNgramsTerm = "pi ^"}),3),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "nn"}),10),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "p_t"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "yields"}),7),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "rhic"}),7),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "gev/c"}),6),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "pi ^"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "central collisions"}),3),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "not found"}),7),((NgramsTerm {unNgramsTerm = "s"},NgramsTerm {unNgramsTerm = "s_nn"}),7),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "phenix experiment"}),5),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "energy"}),3),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "s"}),4),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "nn"}),6),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "p"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "number"}),11),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = "spectra"}),5),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "s_nn"}),3),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "nuclear modification factors"}),4),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "nn"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "phenix experiment"}),8),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "not found"}),3),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "not found"}),15),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "phenix experiment"}),9),((NgramsTerm {unNgramsTerm = "s_nn"},NgramsTerm {unNgramsTerm = "yields"}),3),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "s"}),14),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "s"}),18),((NgramsTerm {unNgramsTerm = "not found"},NgramsTerm {unNgramsTerm = "phi"}),4),((NgramsTerm {unNgramsTerm = "d"},NgramsTerm {unNgramsTerm = "yields"}),3),((NgramsTerm {unNgramsTerm = "nuclear modification factors"},NgramsTerm {unNgramsTerm = "rhic"}),5),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "gev au"}),3),((NgramsTerm {unNgramsTerm = "phenix experiment"},NgramsTerm {unNgramsTerm = "phi"}),3),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "s"}),9),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "midrapidity"}),4),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "function"}),6),((NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"},NgramsTerm {unNgramsTerm = "spectra"}),3),((NgramsTerm {unNgramsTerm = "function"},NgramsTerm {unNgramsTerm = "p"}),5),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "p_t"}),9),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "p_t"}),8),((NgramsTerm {unNgramsTerm = "energy"},NgramsTerm {unNgramsTerm = "eta"}),3),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "spectra"}),6),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "ratio"}),5),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "p collisions"}),6),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "measurements"}),23),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "relativistic heavy ion collider"}),5),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "phi"}),10),((NgramsTerm {unNgramsTerm = "ratio"},NgramsTerm {unNgramsTerm = "sqrt"}),6),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "sqrt"}),25),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "sqrt"}),21),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "particle"}),5),((NgramsTerm {unNgramsTerm = "p collisions"},NgramsTerm {unNgramsTerm = "rhic"}),10),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "particle"}),4),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "phenix experiment"}),3),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "hadrons"}),8),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "transverse momentum"}),3),((NgramsTerm {unNgramsTerm = "s"},NgramsTerm {unNgramsTerm = "yields"}),5),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "function"}),3),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "s"}),3),((NgramsTerm {unNgramsTerm = "phi"},NgramsTerm {unNgramsTerm = "sqrt"}),9),((NgramsTerm {unNgramsTerm = "elliptic 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"rhic"},NgramsTerm {unNgramsTerm = "transverse momentum"}),5),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "d"}),3),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "gev"}),69),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "centralities"}),20),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "centrality dependence"}),8),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "rhic"}),6),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "nn"}),99),((NgramsTerm {unNgramsTerm = "pi ^"},NgramsTerm {unNgramsTerm = "pi ^"}),22),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "nn"}),7),((NgramsTerm {unNgramsTerm = "data"},NgramsTerm {unNgramsTerm = "p"}),4),((NgramsTerm {unNgramsTerm = "au collisions"},NgramsTerm {unNgramsTerm = "phi"}),6),((NgramsTerm {unNgramsTerm = "mid-rapidity"},NgramsTerm {unNgramsTerm = "mid-rapidity"}),18),((NgramsTerm {unNgramsTerm = "midrapidity"},NgramsTerm {unNgramsTerm = "midrapidity"}),13),((NgramsTerm {unNgramsTerm = "eu"},NgramsTerm {unNgramsTerm = "ph"}),5),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "suppression"}),5),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "gev/c"}),30),((NgramsTerm {unNgramsTerm = "central au"},NgramsTerm {unNgramsTerm = "pi ^"}),4),((NgramsTerm {unNgramsTerm = "centrality dependence"},NgramsTerm {unNgramsTerm = "s_nn"}),3),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "measurements"}),58),((NgramsTerm {unNgramsTerm = "yields"},NgramsTerm {unNgramsTerm = "yields"}),15),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "measurements"}),6),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "suppression"}),3),((NgramsTerm {unNgramsTerm = "hadrons"},NgramsTerm {unNgramsTerm = "p collisions"}),3),((NgramsTerm {unNgramsTerm = "p"},NgramsTerm {unNgramsTerm = 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"ratio"}),6),((NgramsTerm {unNgramsTerm = "centralities"},NgramsTerm {unNgramsTerm = "centralities"}),28),((NgramsTerm {unNgramsTerm = "gev/c"},NgramsTerm {unNgramsTerm = "rhic"}),9),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "au"}),101),((NgramsTerm {unNgramsTerm = "central collisions"},NgramsTerm {unNgramsTerm = "central collisions"}),9),((NgramsTerm {unNgramsTerm = "thesis"},NgramsTerm {unNgramsTerm = "thesis"}),13),((NgramsTerm {unNgramsTerm = "ph"},NgramsTerm {unNgramsTerm = "ph"}),12),((NgramsTerm {unNgramsTerm = "eta"},NgramsTerm {unNgramsTerm = "eta"}),13),((NgramsTerm {unNgramsTerm = "gev"},NgramsTerm {unNgramsTerm = "particle"}),8),((NgramsTerm {unNgramsTerm = "case study"},NgramsTerm {unNgramsTerm = "case study"}),24),((NgramsTerm {unNgramsTerm = "rhic"},NgramsTerm {unNgramsTerm = "rhic"}),66),((NgramsTerm {unNgramsTerm = "particle"},NgramsTerm {unNgramsTerm = "particle"}),27),((NgramsTerm {unNgramsTerm = "number"},NgramsTerm {unNgramsTerm = 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collisions"}),15),((NgramsTerm {unNgramsTerm = "measurements"},NgramsTerm {unNgramsTerm = "rhic"}),15),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "transverse momentum"}),7),((NgramsTerm {unNgramsTerm = "au"},NgramsTerm {unNgramsTerm = "hadrons"}),8),((NgramsTerm {unNgramsTerm = "nn"},NgramsTerm {unNgramsTerm = "suppression"}),6)]
  31
  32
  33
  34 test :: IO ()
  35 test = hspec $ do
  36   describe "Cross" $ do
  37     let
  38       (distanceMap,_,_) = doDistanceMap Conditional 0 myCooc
  39     it "Partition test" $ do
  40       partitions <- spinglass 1 distanceMap
  41       let
  42         result = List.length partitions > 1
  43       shouldBe True result
  44