literate-phylomemy.cabal

   1 cabal-version:      3.0
   2 name:               literate-phylomemy
   3 maintainer:         mailto:literate-phylomemy@sourcephile.fr
   4 bug-reports:
   5   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M/issues
   6
   7 homepage:
   8   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M
   9
  10 author:             Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  11 copyright:          Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  12 license:            AGPL-3.0-or-later
  13 license-file:       LICENSES/AGPL-3.0-or-later.txt
  14
  15 -- PVP:             +-+------- breaking API changes
  16 --                  | | +----- non-breaking API additions
  17 --                  | | | +--- code changes with no API change
  18 version:            0.0.0.20240619
  19 stability:          experimental
  20 category:           Data mining
  21 synopsis:           Phylomemetic network algorithms
  22 description:
  23   A phylomemetic network (or phylomemy) is an adaptation
  24   of the concept of the phylogenetic tree,
  25   combined with Richard Dawkins' intuition of a meme,
  26   to describe the complex dynamic structure of transformation
  27   of relations between terms.
  28
  29   Based upon:
  30
  31   * Chavalarias D, Cointet J-P (2013) Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields. PLoS ONE 8(2): e54847. <https://doi.org/10.1371/journal.pone.0054847>
  32
  33   * Chavalarias, D., Lobbé, Q., Delanoë, A., 2021. Draw me Science: Multi-level and multi-scale reconstruction of knowledge dynamics with phylomemies. Scientometrics. <https://doi.org/10.1007/s11192-021-04186-5>
  34
  35 build-type:         Simple
  36 tested-with:        GHC ==9.6.5
  37 extra-doc-files:
  38   ChangeLog.md
  39   Readme.md
  40
  41 -- :r! find tests -name "*.golden" | sort
  42 extra-source-files:
  43   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  44   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  45   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=2.golden
  46   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=3.golden
  47   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=4.golden
  48   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=2.golden
  49   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=3.golden
  50   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=4.golden
  51   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=2.golden
  52   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=3.golden
  53   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=4.golden
  54   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=2.golden
  55   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=3.golden
  56   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=2.golden
  57   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=3.golden
  58   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=2.golden
  59   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=3.golden
  60   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=2.golden
  61   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=3.golden
  62   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=2.minConf=75%.golden
  63   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=3.minConf=75%.golden
  64   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  65   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  66   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=1.golden
  67   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=2.golden
  68   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=1.golden
  69   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=2.golden
  70   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=1.golden
  71   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=2.golden
  72   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=1.golden
  73   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=2.golden
  74   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=1.golden
  75   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=2.golden
  76   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=1.golden
  77   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=2.golden
  78   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=1.golden
  79   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=2.golden
  80   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.2000000000000000000.golden
  81   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.2500000000000000000.golden
  82   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.3333333333333333333.golden
  83   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.5000000000000000000.golden
  84   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.6666666666666666667.golden
  85   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=1.0000000000000000000.golden
  86   tests/Phylomemy/TemporalMatchingSpec/phylomemyWeights/docs=docs0.minSupp=1.minSize=2.golden
  87 extra-tmp-files:
  88
  89 source-repository head
  90   type:     git
  91   location:
  92     https://radicle-mermet.sourcephile.fr/z2364hmzZUAGy1nKdSFa1gLSoUE2M.git
  93
  94 source-repository head
  95   type:     rad
  96   location: rad://z2364hmzZUAGy1nKdSFa1gLSoUE2M
  97
  98 common haskell-variant
  99   default-language:   Haskell2010
 100   default-extensions:
 101     BlockArguments
 102     DefaultSignatures
 103     DeriveGeneric
 104     DerivingStrategies
 105     FlexibleContexts
 106     FlexibleInstances
 107     GeneralizedNewtypeDeriving
 108     ImportQualifiedPost
 109     LambdaCase
 110     MultiParamTypeClasses
 111     NamedFieldPuns
 112     NoImplicitPrelude
 113     PatternSynonyms
 114     RecordWildCards
 115     RoleAnnotations
 116     ScopedTypeVariables
 117     TupleSections
 118     TypeApplications
 119     TypeFamilies
 120     TypeOperators
 121     ViewPatterns
 122
 123   ghc-options:
 124     -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates
 125     -Wpartial-fields -fprint-potential-instances
 126
 127 common library-deps
 128   build-depends:
 129     , array
 130     , base                  >=4.10 && <5
 131     , bytestring
 132     , containers
 133     , deepseq
 134     , hashable
 135     , logic
 136     , parallel
 137     , pretty-simple
 138     , random
 139     , safe-decimal
 140     , scientific
 141     , text
 142     , text-short
 143     , time
 144     , transformers
 145     , unordered-containers
 146     , validity
 147     , validity-containers
 148     , validity-time
 149     , vector
 150
 151 library
 152   import:          haskell-variant, library-deps
 153   hs-source-dirs:  src
 154   exposed-modules:
 155     Clustering.UnionFind.ST
 156     Clustering.FrequentItemSet.BruteForce
 157     Clustering.FrequentItemSet.LCM
 158     Clustering.FrequentItemSet.References
 159     Numeric.Probability
 160     Phylomemy
 161     Phylomemy.Indexation
 162     Phylomemy.References
 163     Phylomemy.Similarity
 164     Phylomemy.TemporalMatching
 165
 166   other-modules:   Prelude
 167   build-depends:   base >=4.10 && <5
 168
 169 test-suite literate-phylomemy-tests
 170   import:          haskell-variant, library-deps
 171   type:            exitcode-stdio-1.0
 172   hs-source-dirs:  tests
 173   main-is:         Spec.hs
 174
 175   -- build-tool-depends: sydtest-discover:sydtest-discover
 176   ghc-options:     -threaded -rtsopts -with-rtsopts=-N
 177   other-modules:
 178     Clustering.FrequentItemSet.BruteForceSpec
 179     Clustering.FrequentItemSet.LCMSpec
 180     Paths_literate_phylomemy
 181     Phylomemy.IndexationSpec
 182     Phylomemy.SimilaritySpec
 183     Phylomemy.TemporalMatchingSpec
 184     Utils
 185
 186   autogen-modules: Paths_literate_phylomemy
 187   build-depends:
 188     , filepath
 189     , genvalidity
 190     , genvalidity-containers
 191     , genvalidity-sydtest
 192     , genvalidity-text
 193     , genvalidity-time
 194     , literate-phylomemy
 195     , relude
 196     , sydtest
 197     , validity
 198     , validity-containers
 199     , validity-text