literate-phylomemy.cabal

   1 cabal-version:      3.0
   2 name:               literate-phylomemy
   3 maintainer:         mailto:literate-phylomemy@sourcephile.fr
   4 bug-reports:
   5   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M/issues
   6
   7 homepage:
   8   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M
   9
  10 author:             Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  11 copyright:          Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  12 license:            AGPL-3.0-or-later
  13 license-file:       LICENSES/AGPL-3.0-or-later.txt
  14
  15 -- PVP:             +-+------- breaking API changes
  16 --                  | | +----- non-breaking API additions
  17 --                  | | | +--- code changes with no API change
  18 version:            0.0.0.20240619
  19 stability:          experimental
  20 category:           Data mining
  21 synopsis:           Phylomemetic network algorithms
  22 description:
  23   A phylomemetic network (or phylomemy) is an adaptation
  24   of the concept of the phylogenetic tree,
  25   combined with Richard Dawkins' intuition of a meme,
  26   to describe the complex dynamic structure of transformation
  27   of relations between terms.
  28
  29   Based upon:
  30
  31   * Chavalarias D, Cointet J-P (2013) Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields. PLoS ONE 8(2): e54847. <https://doi.org/10.1371/journal.pone.0054847>
  32
  33   * Chavalarias, D., Lobbé, Q., Delanoë, A., 2021. Draw me Science: Multi-level and multi-scale reconstruction of knowledge dynamics with phylomemies. Scientometrics. <https://doi.org/10.1007/s11192-021-04186-5>
  34
  35 build-type:         Simple
  36 tested-with:        GHC ==9.6.5
  37 extra-doc-files:
  38   ChangeLog.md
  39   Readme.md
  40
  41 -- :r! find tests -name "*.golden" | sort
  42 extra-source-files:
  43   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  44   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  45   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=2.golden
  46   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=3.golden
  47   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=4.golden
  48   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=2.golden
  49   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=3.golden
  50   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=4.golden
  51   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=2.golden
  52   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=3.golden
  53   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=4.golden
  54   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=2.golden
  55   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=3.golden
  56   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=2.golden
  57   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=3.golden
  58   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=2.golden
  59   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=3.golden
  60   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=2.golden
  61   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=3.golden
  62   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=2.minConf=75%.golden
  63   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=3.minConf=75%.golden
  64   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  65   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  66   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=1.golden
  67   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=2.golden
  68   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=1.golden
  69   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=2.golden
  70   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=1.golden
  71   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=2.golden
  72   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=1.golden
  73   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=2.golden
  74   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=1.golden
  75   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=2.golden
  76   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=1.golden
  77   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=2.golden
  78   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=1.golden
  79   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=2.golden
  80   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=1.golden
  81   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=2.golden
  82   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=3.golden
  83   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=4.golden
  84   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=5.golden
  85
  86 extra-tmp-files:
  87
  88 source-repository head
  89   type:     git
  90   location:
  91     https://radicle-mermet.sourcephile.fr/z2364hmzZUAGy1nKdSFa1gLSoUE2M.git
  92
  93 source-repository head
  94   type:     rad
  95   location: rad://z2364hmzZUAGy1nKdSFa1gLSoUE2M
  96
  97 common haskell-variant
  98   default-language:   Haskell2010
  99   default-extensions:
 100     BlockArguments
 101     DefaultSignatures
 102     DeriveGeneric
 103     DerivingStrategies
 104     FlexibleContexts
 105     FlexibleInstances
 106     GeneralizedNewtypeDeriving
 107     ImportQualifiedPost
 108     LambdaCase
 109     MultiParamTypeClasses
 110     NamedFieldPuns
 111     NoImplicitPrelude
 112     PatternSynonyms
 113     RecordWildCards
 114     RoleAnnotations
 115     ScopedTypeVariables
 116     TupleSections
 117     TypeApplications
 118     TypeFamilies
 119     TypeOperators
 120     ViewPatterns
 121
 122   ghc-options:
 123     -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates
 124     -Wpartial-fields -fprint-potential-instances
 125
 126 common library-deps
 127   build-depends:
 128     , array
 129     , base                  >=4.10 && <5
 130     , bytestring
 131     , containers
 132     , deepseq
 133     , hashable
 134     , logic
 135     , parallel
 136     , pretty-simple
 137     , random
 138     , safe-decimal
 139     , scientific
 140     , text
 141     , text-short
 142     , time
 143     , transformers
 144     , unordered-containers
 145     , validity
 146     , validity-containers
 147     , validity-time
 148     , vector
 149
 150 library
 151   import:          haskell-variant, library-deps
 152   hs-source-dirs:  src
 153   exposed-modules:
 154     Clustering.FrequentItemSet.BruteForce
 155     Clustering.FrequentItemSet.LCM
 156     Clustering.FrequentItemSet.References
 157     Clustering.UnionFind.ST
 158     Numeric.Probability
 159     Phylomemy
 160     Phylomemy.DOT
 161     Phylomemy.Indexation
 162     Phylomemy.References
 163     Phylomemy.Similarity
 164     Phylomemy.TemporalMatching
 165
 166   other-modules:   Prelude
 167   build-depends:   base >=4.10 && <5
 168
 169 test-suite literate-phylomemy-tests
 170   import:          haskell-variant, library-deps
 171   type:            exitcode-stdio-1.0
 172   hs-source-dirs:  tests
 173   main-is:         Spec.hs
 174
 175   -- build-tool-depends: sydtest-discover:sydtest-discover
 176   ghc-options:     -threaded -rtsopts -with-rtsopts=-N
 177   other-modules:
 178     Clustering.FrequentItemSet.BruteForceSpec
 179     Clustering.FrequentItemSet.LCMSpec
 180     Paths_literate_phylomemy
 181     Phylomemy.IndexationSpec
 182     Phylomemy.SimilaritySpec
 183     Phylomemy.TemporalMatchingSpec
 184     Utils
 185
 186   autogen-modules: Paths_literate_phylomemy
 187   build-depends:
 188     , filepath
 189     , genvalidity
 190     , genvalidity-containers
 191     , genvalidity-sydtest
 192     , genvalidity-text
 193     , genvalidity-time
 194     , literate-phylomemy
 195     , relude
 196     , sydtest
 197     , validity
 198     , validity-containers
 199     , validity-text