literate-phylomemy.cabal

   1 cabal-version:      3.0
   2 name:               literate-phylomemy
   3 maintainer:         mailto:literate-phylomemy@sourcephile.fr
   4 bug-reports:
   5   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M/issues
   6
   7 homepage:
   8   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M
   9
  10 author:             Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  11 copyright:          Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  12 license:            AGPL-3.0-or-later
  13 license-file:       LICENSES/AGPL-3.0-or-later.txt
  14
  15 -- PVP:             +-+------- breaking API changes
  16 --                  | | +----- non-breaking API additions
  17 --                  | | | +--- code changes with no API change
  18 version:            0.0.0.20240619
  19 stability:          experimental
  20 category:           Data mining
  21 synopsis:           Phylomemetic network algorithms
  22 description:
  23   A phylomemetic network (or phylomemy) is an adaptation
  24   of the concept of the phylogenetic tree,
  25   combined with Richard Dawkins' intuition of a meme,
  26   to describe the complex dynamic structure of transformation
  27   of relations between terms.
  28
  29   Based upon:
  30
  31   * Chavalarias D, Cointet J-P (2013) Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields. PLoS ONE 8(2): e54847. <https://doi.org/10.1371/journal.pone.0054847>
  32
  33   * Chavalarias, D., Lobbé, Q., Delanoë, A., 2021. Draw me Science: Multi-level and multi-scale reconstruction of knowledge dynamics with phylomemies. Scientometrics. <https://doi.org/10.1007/s11192-021-04186-5>
  34
  35 build-type:         Simple
  36 tested-with:        GHC ==9.6.5
  37 extra-doc-files:
  38   ChangeLog.md
  39   Readme.md
  40
  41 -- :r! find tests -name "*.golden" | sort
  42 extra-source-files:
  43   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  44   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  45   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=2.golden
  46   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=3.golden
  47   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=4.golden
  48   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=2.golden
  49   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=3.golden
  50   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=4.golden
  51   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=2.golden
  52   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=3.golden
  53   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=4.golden
  54   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=2.golden
  55   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=3.golden
  56   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=2.golden
  57   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=3.golden
  58   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=2.golden
  59   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=3.golden
  60   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=2.golden
  61   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=3.golden
  62   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=2.minConf=75%.golden
  63   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=3.minConf=75%.golden
  64   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  65   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  66   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=1.golden
  67   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=2.golden
  68   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=1.golden
  69   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=2.golden
  70   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=1.golden
  71   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=2.golden
  72   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=1.golden
  73   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=2.golden
  74   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=1.golden
  75   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=2.golden
  76   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=1.golden
  77   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=2.golden
  78   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=1.golden
  79   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=2.golden
  80   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.00.scale=0.3333333333333333333.golden
  81   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.00.scale=0.5000000000000000000.golden
  82   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.00.scale=0.6666666666666666667.golden
  83   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.00.scale=1.0000000000000000000.golden
  84   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=0.3333333333333333333.golden
  85   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=0.5000000000000000000.golden
  86   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=0.6666666666666666667.golden
  87   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=0.30.scale=1.0000000000000000000.golden
  88   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=1.00.scale=0.3333333333333333333.golden
  89   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=1.00.scale=0.5000000000000000000.golden
  90   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=1.00.scale=0.6666666666666666667.golden
  91   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningForest/docs=docs0.minSupp=1.minSize=2.lambda=1.00.scale=1.0000000000000000000.golden
  92   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningTrees/docs=docs0.minSupp=1.minSize=2.lambda=0.00.golden
  93   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningTrees/docs=docs0.minSupp=1.minSize=2.lambda=0.30.golden
  94   tests/Phylomemy/TemporalMatchingSpec/dotMaximalSpanningTrees/docs=docs0.minSupp=1.minSize=2.lambda=1.00.golden
  95
  96 extra-tmp-files:
  97
  98 source-repository head
  99   type:     git
 100   location:
 101     https://radicle-mermet.sourcephile.fr/z2364hmzZUAGy1nKdSFa1gLSoUE2M.git
 102
 103 source-repository head
 104   type:     rad
 105   location: rad://z2364hmzZUAGy1nKdSFa1gLSoUE2M
 106
 107 common haskell-variant
 108   default-language:   Haskell2010
 109   default-extensions:
 110     BlockArguments
 111     DefaultSignatures
 112     DeriveGeneric
 113     DerivingStrategies
 114     FlexibleContexts
 115     FlexibleInstances
 116     GeneralizedNewtypeDeriving
 117     ImportQualifiedPost
 118     LambdaCase
 119     MultiParamTypeClasses
 120     NamedFieldPuns
 121     NoImplicitPrelude
 122     PatternSynonyms
 123     RecordWildCards
 124     RoleAnnotations
 125     ScopedTypeVariables
 126     TupleSections
 127     TypeApplications
 128     TypeFamilies
 129     TypeOperators
 130     ViewPatterns
 131
 132   ghc-options:
 133     -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates
 134     -Wpartial-fields -fprint-potential-instances
 135
 136 common library-deps
 137   build-depends:
 138     , array
 139     , base                  >=4.10 && <5
 140     , bytestring
 141     , containers
 142     , deepseq
 143     , hashable
 144     , logic
 145     , parallel
 146     , pretty-simple
 147     , random
 148     , safe-decimal
 149     , scientific
 150     , text
 151     , text-short
 152     , time
 153     , transformers
 154     , unordered-containers
 155     , validity
 156     , validity-containers
 157     , validity-time
 158     , vector
 159
 160 library
 161   import:          haskell-variant, library-deps
 162   hs-source-dirs:  src
 163   exposed-modules:
 164     Clustering.FrequentItemSet.BruteForce
 165     Clustering.FrequentItemSet.LCM
 166     Clustering.FrequentItemSet.References
 167     Clustering.UnionFind.ST
 168     Numeric.Probability
 169     Phylomemy
 170     Phylomemy.DOT
 171     Phylomemy.Indexation
 172     Phylomemy.References
 173     Phylomemy.Similarity
 174     Phylomemy.TemporalMatching
 175
 176   other-modules:   Prelude
 177   build-depends:   base >=4.10 && <5
 178
 179 test-suite literate-phylomemy-tests
 180   import:          haskell-variant, library-deps
 181   type:            exitcode-stdio-1.0
 182   hs-source-dirs:  tests
 183   main-is:         Spec.hs
 184
 185   -- build-tool-depends: sydtest-discover:sydtest-discover
 186   ghc-options:     -threaded -rtsopts -with-rtsopts=-N
 187   other-modules:
 188     Clustering.FrequentItemSet.BruteForceSpec
 189     Clustering.FrequentItemSet.LCMSpec
 190     Paths_literate_phylomemy
 191     Phylomemy.IndexationSpec
 192     Phylomemy.SimilaritySpec
 193     Phylomemy.TemporalMatchingSpec
 194     Utils
 195
 196   autogen-modules: Paths_literate_phylomemy
 197   build-depends:
 198     , filepath
 199     , genvalidity
 200     , genvalidity-containers
 201     , genvalidity-sydtest
 202     , genvalidity-text
 203     , genvalidity-time
 204     , literate-phylomemy
 205     , relude
 206     , sydtest
 207     , validity
 208     , validity-containers
 209     , validity-text