literate-phylomemy.cabal

   1 cabal-version:      3.0
   2 name:               literate-phylomemy
   3 maintainer:         mailto:literate-phylomemy@sourcephile.fr
   4 bug-reports:
   5   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M/issues
   6
   7 homepage:
   8   https://radicle.sourcephile.fr/nodes/radicle-mermet.sourcephile.fr/rad:z2364hmzZUAGy1nKdSFa1gLSoUE2M
   9
  10 author:             Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  11 copyright:          Julien Moutinho <julm+literate-phylomemy@sourcephile.fr>
  12 license:            AGPL-3.0-or-later
  13 license-file:       LICENSES/AGPL-3.0-or-later.txt
  14
  15 -- PVP:             +-+------- breaking API changes
  16 --                  | | +----- non-breaking API additions
  17 --                  | | | +--- code changes with no API change
  18 version:            0.0.0.20240619
  19 stability:          experimental
  20 category:           Data mining
  21 synopsis:           Phylomemetic network algorithms
  22 description:
  23   A phylomemetic network (or phylomemy) is an adaptation
  24   of the concept of the phylogenetic tree,
  25   combined with Richard Dawkins' intuition of a meme,
  26   to describe the complex dynamic structure of transformation
  27   of relations between terms.
  28
  29   Based upon:
  30
  31   * Chavalarias D, Cointet J-P (2013) Phylomemetic Patterns in Science Evolution—The Rise and Fall of Scientific Fields. PLoS ONE 8(2): e54847. <https://doi.org/10.1371/journal.pone.0054847>
  32
  33   * Chavalarias, D., Lobbé, Q., Delanoë, A., 2021. Draw me Science: Multi-level and multi-scale reconstruction of knowledge dynamics with phylomemies. Scientometrics. <https://doi.org/10.1007/s11192-021-04186-5>
  34
  35 build-type:         Simple
  36 tested-with:        GHC ==9.6.5
  37 extra-doc-files:
  38   ChangeLog.md
  39   Readme.md
  40
  41 -- :r! find tests -name "*.golden" | sort
  42 extra-source-files:
  43   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  44   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  45   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=2.golden
  46   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=3.golden
  47   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=1.minSize=4.golden
  48   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=2.golden
  49   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=3.golden
  50   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=2.minSize=4.golden
  51   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=2.golden
  52   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=3.golden
  53   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=HAL03500847T2.minSupp=3.minSize=4.golden
  54   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=2.golden
  55   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=2.minSize=3.golden
  56   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=2.golden
  57   tests/Clustering/FrequentItemSet/BruteForce/allClosedFrequentItemSets/db=TakeakiUno.minSupp=3.minSize=3.golden
  58   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=2.golden
  59   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=HAL03500847T2.minSupp=3.golden
  60   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=2.golden
  61   tests/Clustering/FrequentItemSet/BruteForce/allFrequentItemSets/db=TakeakiUno.minSupp=3.golden
  62   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=2.minConf=75%.golden
  63   tests/Clustering/FrequentItemSet/BruteForce/associationRules/db=TakeakiUno.minSupp=3.minConf=75%.golden
  64   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=1.golden
  65   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=1.minSize=2.golden
  66   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=1.golden
  67   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=1.minSupp=2.minSize=2.golden
  68   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=1.golden
  69   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=1.minSize=2.golden
  70   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=1.golden
  71   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=2.minSupp=2.minSize=2.golden
  72   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=1.golden
  73   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=1.minSize=2.golden
  74   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=1.golden
  75   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=3.minSupp=2.minSize=2.golden
  76   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=1.golden
  77   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=1.minSize=2.golden
  78   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=1.golden
  79   tests/Clustering/FrequentItemSet/LCM/closedFrequentItemSets/db=4.minSupp=2.minSize=2.golden
  80   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.2000000000000000000.golden
  81   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.2500000000000000000.golden
  82   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.3333333333333333333.golden
  83   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.5000000000000000000.golden
  84   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=0.6666666666666666667.golden
  85   tests/Phylomemy/TemporalMatchingSpec/phylomemyDOT/docs=docs0.minSupp=1.minSize=2.minWeight=1.0000000000000000000.golden
  86   tests/Phylomemy/TemporalMatchingSpec/phylomemyWeights/docs=docs0.minSupp=1.minSize=2.golden
  87
  88 extra-tmp-files:
  89
  90 source-repository head
  91   type:     git
  92   location:
  93     https://radicle-mermet.sourcephile.fr/z2364hmzZUAGy1nKdSFa1gLSoUE2M.git
  94
  95 source-repository head
  96   type:     rad
  97   location: rad://z2364hmzZUAGy1nKdSFa1gLSoUE2M
  98
  99 common haskell-variant
 100   default-language:   Haskell2010
 101   default-extensions:
 102     BlockArguments
 103     DefaultSignatures
 104     DeriveGeneric
 105     DerivingStrategies
 106     FlexibleContexts
 107     FlexibleInstances
 108     GeneralizedNewtypeDeriving
 109     ImportQualifiedPost
 110     LambdaCase
 111     MultiParamTypeClasses
 112     NamedFieldPuns
 113     NoImplicitPrelude
 114     PatternSynonyms
 115     RecordWildCards
 116     RoleAnnotations
 117     ScopedTypeVariables
 118     TupleSections
 119     TypeApplications
 120     TypeFamilies
 121     TypeOperators
 122     ViewPatterns
 123
 124   ghc-options:
 125     -Wall -Wincomplete-uni-patterns -Wincomplete-record-updates
 126     -Wpartial-fields -fprint-potential-instances
 127
 128 common library-deps
 129   build-depends:
 130     , array
 131     , base                  >=4.10 && <5
 132     , bytestring
 133     , containers
 134     , deepseq
 135     , hashable
 136     , logic
 137     , parallel
 138     , pretty-simple
 139     , random
 140     , safe-decimal
 141     , scientific
 142     , text
 143     , text-short
 144     , time
 145     , transformers
 146     , unordered-containers
 147     , validity
 148     , validity-containers
 149     , validity-time
 150     , vector
 151
 152 library
 153   import:          haskell-variant, library-deps
 154   hs-source-dirs:  src
 155   exposed-modules:
 156     Clustering.FrequentItemSet.BruteForce
 157     Clustering.FrequentItemSet.LCM
 158     Clustering.FrequentItemSet.References
 159     Clustering.UnionFind.ST
 160     Numeric.Probability
 161     Phylomemy
 162     Phylomemy.DOT
 163     Phylomemy.Indexation
 164     Phylomemy.References
 165     Phylomemy.Similarity
 166     Phylomemy.TemporalMatching
 167
 168   other-modules:   Prelude
 169   build-depends:   base >=4.10 && <5
 170
 171 test-suite literate-phylomemy-tests
 172   import:          haskell-variant, library-deps
 173   type:            exitcode-stdio-1.0
 174   hs-source-dirs:  tests
 175   main-is:         Spec.hs
 176
 177   -- build-tool-depends: sydtest-discover:sydtest-discover
 178   ghc-options:     -threaded -rtsopts -with-rtsopts=-N
 179   other-modules:
 180     Clustering.FrequentItemSet.BruteForceSpec
 181     Clustering.FrequentItemSet.LCMSpec
 182     Paths_literate_phylomemy
 183     Phylomemy.IndexationSpec
 184     Phylomemy.SimilaritySpec
 185     Phylomemy.TemporalMatchingSpec
 186     Utils
 187
 188   autogen-modules: Paths_literate_phylomemy
 189   build-depends:
 190     , filepath
 191     , genvalidity
 192     , genvalidity-containers
 193     , genvalidity-sydtest
 194     , genvalidity-text
 195     , genvalidity-time
 196     , literate-phylomemy
 197     , relude
 198     , sydtest
 199     , validity
 200     , validity-containers
 201     , validity-text